Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NYE68_RS02200 Genome accession   NZ_CP152012
Coordinates   424984..425421 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0447     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 419984..430421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE68_RS02175 (NYE68_02175) - 421003..422139 (+) 1137 WP_025284207.1 zinc-dependent alcohol dehydrogenase -
  NYE68_RS02180 (NYE68_02180) - 422154..422588 (+) 435 WP_012116767.1 RDD family protein -
  NYE68_RS02185 (NYE68_02185) - 422661..422984 (+) 324 WP_007409357.1 YckD family protein -
  NYE68_RS02190 (NYE68_02190) - 423088..424524 (+) 1437 WP_324636140.1 family 1 glycosylhydrolase -
  NYE68_RS02195 (NYE68_02195) nin/comJ 424565..424963 (-) 399 WP_039252825.1 competence protein ComJ Regulator
  NYE68_RS02200 (NYE68_02200) nucA/comI 424984..425421 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NYE68_RS02205 (NYE68_02205) hxlB 425779..426336 (-) 558 WP_014416874.1 6-phospho-3-hexuloisomerase -
  NYE68_RS02210 (NYE68_02210) hxlA 426333..426968 (-) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  NYE68_RS02215 (NYE68_02215) - 427200..427562 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=984794 NYE68_RS02200 WP_003156588.1 424984..425421(-) (nucA/comI) [Bacillus sp. FSL R5-0447]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=984794 NYE68_RS02200 WP_003156588.1 424984..425421(-) (nucA/comI) [Bacillus sp. FSL R5-0447]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGAGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGGTCGGACATCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment