Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   NYE68_RS02195 Genome accession   NZ_CP152012
Coordinates   424565..424963 (-) Length   132 a.a.
NCBI ID   WP_039252825.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0447     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 419565..429963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE68_RS02170 (NYE68_02170) - 419736..420938 (+) 1203 WP_014416870.1 GTP-binding protein -
  NYE68_RS02175 (NYE68_02175) - 421003..422139 (+) 1137 WP_025284207.1 zinc-dependent alcohol dehydrogenase -
  NYE68_RS02180 (NYE68_02180) - 422154..422588 (+) 435 WP_012116767.1 RDD family protein -
  NYE68_RS02185 (NYE68_02185) - 422661..422984 (+) 324 WP_007409357.1 YckD family protein -
  NYE68_RS02190 (NYE68_02190) - 423088..424524 (+) 1437 WP_324636140.1 family 1 glycosylhydrolase -
  NYE68_RS02195 (NYE68_02195) nin/comJ 424565..424963 (-) 399 WP_039252825.1 competence protein ComJ Regulator
  NYE68_RS02200 (NYE68_02200) nucA/comI 424984..425421 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NYE68_RS02205 (NYE68_02205) hxlB 425779..426336 (-) 558 WP_014416874.1 6-phospho-3-hexuloisomerase -
  NYE68_RS02210 (NYE68_02210) hxlA 426333..426968 (-) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  NYE68_RS02215 (NYE68_02215) - 427200..427562 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14993.97 Da        Isoelectric Point: 4.9712

>NTDB_id=984793 NYE68_RS02195 WP_039252825.1 424565..424963(-) (nin/comJ) [Bacillus sp. FSL R5-0447]
MNKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFFHIPKGRYSLTCYSVPAEISDLHADTYIIDAASM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=984793 NYE68_RS02195 WP_039252825.1 424565..424963(-) (nin/comJ) [Bacillus sp. FSL R5-0447]
TTGAATAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAGGCAAGGAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTTCTTTCATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCTCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75.758

100

0.758

Multiple sequence alignment