Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NYE36_RS18060 Genome accession   NZ_CP152011
Coordinates   3626423..3627808 (-) Length   461 a.a.
NCBI ID   WP_265451073.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0593     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3621423..3632808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE36_RS18025 (NYE36_18025) flgL 3621598..3622515 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  NYE36_RS18030 (NYE36_18030) flgK 3622527..3624044 (-) 1518 WP_063094265.1 flagellar hook-associated protein FlgK -
  NYE36_RS18035 (NYE36_18035) - 3624060..3624542 (-) 483 WP_265451072.1 flagellar protein FlgN -
  NYE36_RS18040 (NYE36_18040) flgM 3624557..3624823 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  NYE36_RS18045 (NYE36_18045) - 3624893..3625312 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  NYE36_RS18050 (NYE36_18050) comFC 3625386..3626075 (-) 690 WP_198404715.1 phosphoribosyltransferase family protein Machinery gene
  NYE36_RS18055 (NYE36_18055) - 3626081..3626365 (-) 285 WP_007407481.1 competence protein ComFB -
  NYE36_RS18060 (NYE36_18060) comFA 3626423..3627808 (-) 1386 WP_265451073.1 DEAD/DEAH box helicase Machinery gene
  NYE36_RS18065 (NYE36_18065) - 3627917..3628765 (-) 849 WP_007407483.1 DegV family protein -
  NYE36_RS18070 (NYE36_18070) degU 3628863..3629552 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NYE36_RS18075 (NYE36_18075) degS 3629629..3630792 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  NYE36_RS18080 (NYE36_18080) - 3631015..3631662 (+) 648 WP_003151384.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52468.84 Da        Isoelectric Point: 10.1130

>NTDB_id=984777 NYE36_RS18060 WP_265451073.1 3626423..3627808(-) (comFA) [Bacillus sp. FSL R5-0593]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFTEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVVMGRADELTSLYSWNQAYENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLGFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSHLPVFLFVPSVHILKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGLLDLLVTTTILERGVTAPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITSGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=984777 NYE36_RS18060 WP_265451073.1 3626423..3627808(-) (comFA) [Bacillus sp. FSL R5-0593]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGACCAGCGCATTAAGCGTTTTACAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCGTGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAGGCCTATGAAAACAG
CTGGGAACCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCTCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACTCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAGGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACATCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACATATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCTGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTCACCGCGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACAGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATCACAAGCGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(330-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.391

99.783

0.623

Multiple sequence alignment