Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   NYE36_RS18050 Genome accession   NZ_CP152011
Coordinates   3625386..3626075 (-) Length   229 a.a.
NCBI ID   WP_198404715.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0593     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3620386..3631075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE36_RS18015 (NYE36_18015) fliW 3620476..3620907 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  NYE36_RS18020 (NYE36_18020) - 3620937..3621506 (-) 570 WP_032867077.1 DUF6470 family protein -
  NYE36_RS18025 (NYE36_18025) flgL 3621598..3622515 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  NYE36_RS18030 (NYE36_18030) flgK 3622527..3624044 (-) 1518 WP_063094265.1 flagellar hook-associated protein FlgK -
  NYE36_RS18035 (NYE36_18035) - 3624060..3624542 (-) 483 WP_265451072.1 flagellar protein FlgN -
  NYE36_RS18040 (NYE36_18040) flgM 3624557..3624823 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  NYE36_RS18045 (NYE36_18045) - 3624893..3625312 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  NYE36_RS18050 (NYE36_18050) comFC 3625386..3626075 (-) 690 WP_198404715.1 phosphoribosyltransferase family protein Machinery gene
  NYE36_RS18055 (NYE36_18055) - 3626081..3626365 (-) 285 WP_007407481.1 competence protein ComFB -
  NYE36_RS18060 (NYE36_18060) comFA 3626423..3627808 (-) 1386 WP_265451073.1 DEAD/DEAH box helicase Machinery gene
  NYE36_RS18065 (NYE36_18065) - 3627917..3628765 (-) 849 WP_007407483.1 DegV family protein -
  NYE36_RS18070 (NYE36_18070) degU 3628863..3629552 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NYE36_RS18075 (NYE36_18075) degS 3629629..3630792 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25229.88 Da        Isoelectric Point: 8.2921

>NTDB_id=984776 NYE36_RS18050 WP_198404715.1 3625386..3626075(-) (comFC) [Bacillus sp. FSL R5-0593]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSKFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=984776 NYE36_RS18050 WP_198404715.1 3625386..3626075(-) (comFC) [Bacillus sp. FSL R5-0593]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAACAAGA
GATATGCAGCATATGCAGCAGCAAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598

Multiple sequence alignment