Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   NYE36_RS13080 Genome accession   NZ_CP152011
Coordinates   2673933..2674310 (-) Length   125 a.a.
NCBI ID   WP_015417814.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0593     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2668933..2679310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE36_RS13040 (NYE36_13040) - 2669431..2670225 (+) 795 WP_199022042.1 YqhG family protein -
  NYE36_RS13045 (NYE36_13045) sinI 2670402..2670575 (+) 174 WP_003153105.1 anti-repressor SinI family protein Regulator
  NYE36_RS13050 (NYE36_13050) sinR 2670609..2670944 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  NYE36_RS13055 (NYE36_13055) - 2670992..2671777 (-) 786 WP_007408329.1 TasA family protein -
  NYE36_RS13060 (NYE36_13060) - 2671842..2672426 (-) 585 WP_015240205.1 signal peptidase I -
  NYE36_RS13065 (NYE36_13065) tapA 2672398..2673069 (-) 672 WP_015417813.1 amyloid fiber anchoring/assembly protein TapA -
  NYE36_RS13070 (NYE36_13070) - 2673328..2673657 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  NYE36_RS13075 (NYE36_13075) - 2673697..2673876 (-) 180 WP_003153093.1 YqzE family protein -
  NYE36_RS13080 (NYE36_13080) comGG 2673933..2674310 (-) 378 WP_015417814.1 competence type IV pilus minor pilin ComGG Machinery gene
  NYE36_RS13085 (NYE36_13085) comGF 2674311..2674811 (-) 501 WP_254922226.1 competence type IV pilus minor pilin ComGF -
  NYE36_RS13090 (NYE36_13090) comGE 2674720..2675034 (-) 315 WP_094032244.1 competence type IV pilus minor pilin ComGE -
  NYE36_RS13095 (NYE36_13095) comGD 2675018..2675455 (-) 438 WP_094032243.1 competence type IV pilus minor pilin ComGD Machinery gene
  NYE36_RS13100 (NYE36_13100) comGC 2675445..2675753 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  NYE36_RS13105 (NYE36_13105) comGB 2675758..2676795 (-) 1038 WP_015417819.1 competence type IV pilus assembly protein ComGB Machinery gene
  NYE36_RS13110 (NYE36_13110) comGA 2676782..2677856 (-) 1075 Protein_2538 competence type IV pilus ATPase ComGA -
  NYE36_RS13115 (NYE36_13115) - 2678049..2678999 (-) 951 WP_015417820.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 14167.09 Da        Isoelectric Point: 9.7165

>NTDB_id=984755 NYE36_RS13080 WP_015417814.1 2673933..2674310(-) (comGG) [Bacillus sp. FSL R5-0593]
MYKSDGFIYPAVLFVSAAVLLVISYTSSDFITRKTFAKEAGEYWIGENLLQNGALLSSRHMTQGQKVQTGTQRFPYGTVS
FHITGSDRRETVQVTIQAETTTGTRREAHLLFDQKKKQLIQWTEV

Nucleotide


Download         Length: 378 bp        

>NTDB_id=984755 NYE36_RS13080 WP_015417814.1 2673933..2674310(-) (comGG) [Bacillus sp. FSL R5-0593]
ATGTACAAATCTGACGGTTTTATATATCCCGCGGTTCTGTTTGTTTCTGCCGCAGTTTTACTTGTCATCAGCTATACTTC
CTCTGATTTCATCACCCGAAAAACATTTGCAAAAGAGGCCGGGGAGTACTGGATCGGAGAGAACCTGCTCCAAAACGGCG
CGCTGCTGTCAAGCCGCCATATGACACAGGGACAAAAGGTCCAAACTGGTACACAGCGTTTTCCGTATGGCACCGTTTCT
TTTCACATCACGGGGAGTGATCGCCGGGAAACGGTTCAGGTTACAATTCAGGCGGAAACCACGACAGGTACGAGACGGGA
GGCTCACCTTTTGTTCGATCAGAAGAAGAAACAGCTGATTCAATGGACGGAAGTATAA

Domains

Predicted by InterproScan.

ComG operon protein 7 (ComGG)

(30-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Bacillus subtilis subsp. subtilis str. 168

50.806

99.2

0.504

Multiple sequence alignment