Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   MKY18_RS16220 Genome accession   NZ_CP152010
Coordinates   3176205..3176894 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus sp. FSL R7-0672     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3171205..3181894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY18_RS16185 (MKY18_16185) - 3171283..3171765 (-) 483 WP_034660146.1 flagellar protein FlgN -
  MKY18_RS16190 (MKY18_16190) flgM 3171784..3172047 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  MKY18_RS16195 (MKY18_16195) - 3172127..3172546 (-) 420 WP_044139338.1 TIGR03826 family flagellar region protein -
  MKY18_RS16200 (MKY18_16200) comFC 3172603..3173289 (-) 687 WP_181462031.1 ComF family protein Machinery gene
  MKY18_RS16205 (MKY18_16205) - 3173286..3173579 (-) 294 WP_044139337.1 competence protein ComFB -
  MKY18_RS16210 (MKY18_16210) comFA 3173646..3175025 (-) 1380 WP_342497579.1 DEAD/DEAH box helicase Machinery gene
  MKY18_RS16215 (MKY18_16215) - 3175145..3175987 (-) 843 WP_044139336.1 DegV family protein -
  MKY18_RS16220 (MKY18_16220) degU 3176205..3176894 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  MKY18_RS16225 (MKY18_16225) degS 3176959..3178134 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  MKY18_RS16230 (MKY18_16230) - 3178356..3179024 (+) 669 WP_003212936.1 YigZ family protein -
  MKY18_RS16235 (MKY18_16235) - 3179009..3180097 (+) 1089 WP_065097931.1 LCP family protein -
  MKY18_RS16240 (MKY18_16240) - 3180133..3181200 (-) 1068 WP_003212692.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=984707 MKY18_RS16220 WP_008348273.1 3176205..3176894(-) (degU) [Bacillus sp. FSL R7-0672]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=984707 MKY18_RS16220 WP_008348273.1 3176205..3176894(-) (degU) [Bacillus sp. FSL R7-0672]
GTGACTAAAGTAAATATTGTAATTATTGATGATCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGAGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTAGAGGCTACAAAGCAGCTAGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTGAAAACAGGAGCAAGAGGCTACCTGTTAAAAGA
AATGGATGCAGACACGCTCATTGAAGCAGTGAAAGTTGTAGCTGACGGAGGATCTTATTTACATCCGAAAGTTACTCATA
ACTTAGTAAATGAATTCCGACGCCTAGCGACTAGTGGCGTTTCAGCACATCCACAGCATGAAGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACGAGACGTGAGTGCGAAGTACTTCAAATGTTAGCTGACGGAAAGAGCAATAGAGGAATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTACAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCAATTAAGAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment