Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   MKY18_RS11070 Genome accession   NZ_CP152010
Coordinates   2209553..2211289 (-) Length   578 a.a.
NCBI ID   WP_065098378.1    Uniprot ID   -
Organism   Bacillus sp. FSL R7-0672     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2204553..2216289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY18_RS11050 (MKY18_11050) - 2205431..2206531 (-) 1101 WP_065098377.1 Rap family tetratricopeptide repeat protein -
  MKY18_RS11055 (MKY18_11055) - 2206591..2206716 (-) 126 WP_260406885.1 hypothetical protein -
  MKY18_RS11060 (MKY18_11060) spo0A 2206988..2207791 (-) 804 WP_003215740.1 sporulation transcription factor Spo0A Regulator
  MKY18_RS11065 (MKY18_11065) spoIVB 2208077..2209354 (-) 1278 WP_003215755.1 SpoIVB peptidase -
  MKY18_RS11070 (MKY18_11070) recN 2209553..2211289 (-) 1737 WP_065098378.1 DNA repair protein RecN Machinery gene
  MKY18_RS11075 (MKY18_11075) argR 2211323..2211772 (-) 450 WP_065098379.1 transcriptional regulator ArgR -
  MKY18_RS11080 (MKY18_11080) - 2211932..2212786 (-) 855 WP_065098380.1 TlyA family RNA methyltransferase -
  MKY18_RS11085 (MKY18_11085) dxs 2212783..2214684 (-) 1902 WP_044140998.1 1-deoxy-D-xylulose-5-phosphate synthase -
  MKY18_RS11090 (MKY18_11090) - 2214835..2215725 (-) 891 WP_113767412.1 polyprenyl synthetase family protein -
  MKY18_RS11095 (MKY18_11095) - 2215715..2215975 (-) 261 WP_003215880.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64780.54 Da        Isoelectric Point: 4.7788

>NTDB_id=984686 MKY18_RS11070 WP_065098378.1 2209553..2211289(-) (recN) [Bacillus sp. FSL R7-0672]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPAADHPVFAL
CEEQGIDATDEMMILRRDINNNGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPAL
SQYQEAYEQNTKTAQKLKQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDEKLQEERHQISNYEKIFSSLQNAYNALRN
EQGGLDWVGMSSSELEQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTT
VEEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAMSRDALLEALNVSELRKKWAKKLAKQIQTELKDLYMEKSTFDTSFS
IRYAPFSSTDNPLLDGKPVQLGKNGIDQAQFVISTNPGEPMKSLSKVASGGEISRVMLAVKSIFSAKQEVTSIIFDEVDT
GVSGRVAQAIAEKIYKVAAGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTSVKPLNHEEKVSEIGRMIAGVEVTELT
KQHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=984686 MKY18_RS11070 WP_065098378.1 2209553..2211289(-) (recN) [Bacillus sp. FSL R7-0672]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACGGTTTCATTTGAAAAAGGACTCACAGTCCT
AACAGGGGAAACAGGTGCAGGGAAATCTATCATGATTGACGCTGTCTCACTTCTTGTGGGAGGTAGAGGGTCGTCTGAAT
TTGTTCGTTATGGTGAGAAAAAGGCTGAGCTGGAGGGGCTTTTTCTTGTACCAGCAGCTGACCATCCTGTATTTGCTTTA
TGCGAAGAGCAGGGAATTGACGCAACGGATGAAATGATGATTCTTCGCCGTGATATTAACAATAACGGGAAAAGCATTTG
CCGTATCAATGGCAAGCTCGTTACAATCTCACTTTTACGCGAAGTAGGACGCCTTTTGCTCGATATACATGGGCAGCACG
ATAACCAGTTATTGATGGAGGATGAAAATCATCTGCATTTACTCGATCAATTTGGAGCAGAAGAAATTGCACCTGCTTTG
TCACAGTATCAAGAAGCATATGAGCAAAATACAAAGACAGCCCAAAAGCTAAAACAGCTCTCTGAGAATGAGCAGGAAAT
GGTGCACCGGTTAGATTTACTGCAATTTCAGCTAGAAGAGATTGAAGCGGCACAATTAGAGCCGGGAGAAGATGAGAAGC
TTCAAGAAGAGCGCCATCAGATCAGCAACTACGAAAAAATCTTTTCCTCACTCCAAAACGCCTATAATGCCTTGCGCAAT
GAGCAGGGGGGACTTGATTGGGTTGGCATGTCATCAAGCGAGCTCGAGCAGGTTTCTGAGATCAATGACGATCTGAAAAA
GCTATCCGAACAAGTGTCGAACTCTTACTATTTATTAGAGGATTCGACGTTCCAAATGCGAAGCATGCTGGATCAATTAG
AGTTCGACCCAGCACGACTTGATTTTATTGAGTCTAGGCTGAATGAAATGAAGCAGTTAAAACGAAAGTACGGGACAACG
GTTGAGGAAATTTTGGAGTATGCGGCGAAGATTGAAGAAGAAATCGATCAAATTCAAAATCGAGATAGTCACCTGCAGAC
GCTTAAAAACAAACTGGATGCAATGAGCCGTGACGCTCTGCTTGAAGCACTTAACGTTTCGGAGCTTCGTAAAAAATGGG
CCAAAAAGCTAGCGAAGCAAATTCAAACAGAACTAAAGGATTTGTATATGGAGAAGTCAACGTTTGATACATCCTTTTCC
ATTCGGTATGCGCCTTTTAGCAGCACGGATAATCCGCTACTAGATGGAAAGCCCGTCCAGCTTGGAAAAAACGGAATCGA
CCAAGCTCAATTTGTGATTTCTACTAATCCTGGCGAACCGATGAAATCTTTATCAAAAGTTGCCTCGGGTGGAGAAATTT
CACGTGTTATGCTCGCCGTGAAAAGTATCTTCTCAGCCAAACAAGAAGTCACTTCCATTATTTTCGATGAGGTCGATACG
GGCGTAAGCGGCAGAGTTGCACAGGCGATTGCCGAAAAAATTTACAAAGTGGCGGCTGGCTCACAAGTGCTCTGCATTAC
GCACCTCCCGCAAGTAGCAGCAATGGCTGACACGCACCTCTTCATTTCTAAACGCTCTAAAGCAGGCAGAACACTGACAA
GCGTCAAACCATTAAATCATGAAGAAAAAGTGAGTGAAATTGGCAGGATGATTGCGGGTGTGGAAGTCACTGAGCTGACA
AAACAGCACGCAAAAGAATTGCTGCATCAAGCAAATGATGTCAAAACAACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

74.74

100

0.747

Multiple sequence alignment