Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   MKX57_RS15455 Genome accession   NZ_CP152007
Coordinates   3152933..3153265 (-) Length   110 a.a.
NCBI ID   WP_008181040.1    Uniprot ID   -
Organism   Lysinibacillus sp. FSL M8-0216     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3147933..3158265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKX57_RS15425 (MKX57_15425) gcvPA 3148069..3149415 (-) 1347 WP_008181054.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  MKX57_RS15430 (MKX57_15430) gcvT 3149441..3150544 (-) 1104 WP_089986109.1 glycine cleavage system aminomethyltransferase GcvT -
  MKX57_RS15435 (MKX57_15435) - 3151048..3151563 (-) 516 WP_089986110.1 shikimate kinase -
  MKX57_RS15440 (MKX57_15440) comGF 3151762..3152190 (-) 429 WP_089986111.1 competence type IV pilus minor pilin ComGF -
  MKX57_RS15445 (MKX57_15445) - 3152183..3152500 (-) 318 WP_089986112.1 hypothetical protein -
  MKX57_RS15450 (MKX57_15450) comGD 3152493..3152933 (-) 441 WP_008181042.1 competence type IV pilus minor pilin ComGD -
  MKX57_RS15455 (MKX57_15455) comGC 3152933..3153265 (-) 333 WP_008181040.1 competence type IV pilus major pilin ComGC Machinery gene
  MKX57_RS15460 (MKX57_15460) comGB 3153267..3154349 (-) 1083 WP_089986113.1 competence type IV pilus assembly protein ComGB -
  MKX57_RS15465 (MKX57_15465) comGA 3154324..3155343 (-) 1020 WP_008181034.1 competence type IV pilus ATPase ComGA -
  MKX57_RS15470 (MKX57_15470) - 3155669..3156379 (+) 711 WP_008181032.1 helix-turn-helix domain-containing protein -
  MKX57_RS15475 (MKX57_15475) - 3156497..3156739 (+) 243 WP_004231035.1 DUF2626 family protein -
  MKX57_RS15480 (MKX57_15480) - 3156787..3157431 (-) 645 WP_342550405.1 MBL fold metallo-hydrolase -
  MKX57_RS15485 (MKX57_15485) - 3157601..3157780 (+) 180 WP_008181026.1 DUF2759 domain-containing protein -

Sequence

Protein


Download         Length: 110 a.a.        Molecular weight: 12241.32 Da        Isoelectric Point: 5.1145

>NTDB_id=984550 MKX57_RS15455 WP_008181040.1 3152933..3153265(-) (comGC) [Lysinibacillus sp. FSL M8-0216]
MKHIKQQNGFTLIEMLIVLLIISILILITIPNVTKHFATIDEKGCAAYINMVQGQVEAYRVDFMAYPTLEDLVKEGYLKE
NETTCPNKEEIVITTKGEVRLANVGAGTNG

Nucleotide


Download         Length: 333 bp        

>NTDB_id=984550 MKX57_RS15455 WP_008181040.1 3152933..3153265(-) (comGC) [Lysinibacillus sp. FSL M8-0216]
ATGAAACATATTAAACAACAAAATGGTTTTACTTTAATCGAAATGCTCATTGTTTTGTTAATCATTTCTATTCTTATTTT
AATTACAATTCCAAATGTTACGAAGCACTTCGCTACGATTGATGAGAAGGGCTGTGCTGCCTATATTAATATGGTACAGG
GGCAAGTAGAAGCCTATAGAGTGGATTTTATGGCATATCCAACTTTAGAGGATTTAGTAAAAGAAGGCTATTTGAAAGAA
AATGAAACAACTTGTCCTAATAAAGAAGAAATAGTTATTACGACTAAGGGAGAGGTACGGTTAGCAAATGTCGGTGCAGG
TACGAATGGCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

55.208

87.273

0.482
  comGC Staphylococcus aureus MW2

45.263

86.364

0.391
  comGC Staphylococcus aureus N315

45.263

86.364

0.391

Multiple sequence alignment