Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MKY80_RS23105 Genome accession   NZ_CP152004
Coordinates   4652125..4652694 (-) Length   189 a.a.
NCBI ID   WP_008177953.1    Uniprot ID   -
Organism   Lysinibacillus sp. FSL R5-0849     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4647125..4657694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY80_RS23085 (MKY80_23085) rplI 4648256..4648702 (-) 447 WP_008177943.1 50S ribosomal protein L9 -
  MKY80_RS23090 (MKY80_23090) - 4648702..4650672 (-) 1971 WP_008177945.1 DHH family phosphoesterase -
  MKY80_RS23095 (MKY80_23095) - 4650686..4651627 (-) 942 WP_089986460.1 YybS family protein -
  MKY80_RS23100 (MKY80_23100) rpsR 4651850..4652086 (-) 237 WP_004233359.1 30S ribosomal protein S18 -
  MKY80_RS23105 (MKY80_23105) ssbA 4652125..4652694 (-) 570 WP_008177953.1 single-stranded DNA-binding protein Machinery gene
  MKY80_RS23110 (MKY80_23110) rpsF 4652742..4653029 (-) 288 WP_008177955.1 30S ribosomal protein S6 -
  MKY80_RS23115 (MKY80_23115) - 4653208..4653792 (+) 585 WP_008177957.1 DUF3267 domain-containing protein -
  MKY80_RS23120 (MKY80_23120) - 4653834..4654874 (-) 1041 WP_089986461.1 acyl-CoA dehydrogenase -
  MKY80_RS23125 (MKY80_23125) ychF 4654957..4656057 (-) 1101 WP_008177960.1 redox-regulated ATPase YchF -
  MKY80_RS23130 (MKY80_23130) - 4656155..4656355 (-) 201 WP_008177961.1 DUF951 domain-containing protein -
  MKY80_RS23135 (MKY80_23135) - 4656357..4657229 (-) 873 WP_342531388.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20589.58 Da        Isoelectric Point: 4.7719

>NTDB_id=984474 MKY80_RS23105 WP_008177953.1 4652125..4652694(-) (ssbA) [Lysinibacillus sp. FSL R5-0849]
MINRVVLVGRLTKDPELRYTPNGIASTRFTVAVNRAFSNQQGEREADFINCVAWRKQAENLANFMRKGSLIGVEGRIQTG
SYEGQDGKRVYTTDVVADSVQFLEPRNGSGAPAPQYGGGQTYGNNQPSYGGGQPQQQFGGAMPGQGSYGGDAYQQNQPPM
NQPNYTRVDEDPFANSKGPIEVSEDDLPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=984474 MKY80_RS23105 WP_008177953.1 4652125..4652694(-) (ssbA) [Lysinibacillus sp. FSL R5-0849]
ATGATAAACCGTGTCGTATTAGTTGGAAGACTAACAAAAGATCCTGAGCTACGTTATACACCAAATGGAATTGCGTCTAC
AAGATTTACAGTTGCTGTGAATCGTGCATTCTCAAATCAACAAGGTGAACGTGAAGCTGATTTCATTAACTGTGTTGCAT
GGCGAAAACAGGCTGAAAACCTAGCGAACTTCATGCGAAAAGGAAGTTTAATTGGGGTAGAAGGTCGTATCCAAACAGGC
AGTTATGAAGGACAAGACGGTAAGCGAGTATATACAACAGACGTTGTGGCGGATAGCGTACAGTTTTTAGAACCACGTAA
TGGTAGCGGTGCTCCTGCTCCTCAATACGGTGGTGGACAAACTTACGGTAATAACCAACCGTCATATGGCGGCGGTCAAC
CACAACAGCAGTTTGGTGGCGCTATGCCAGGACAGGGTTCCTATGGCGGCGATGCTTATCAGCAAAATCAACCACCTATG
AATCAGCCAAACTATACACGTGTAGATGAGGATCCATTTGCTAATAGCAAAGGACCGATAGAAGTATCTGAGGATGATCT
TCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.497

100

0.545
  ssb Latilactobacillus sakei subsp. sakei 23K

48.677

100

0.487

Multiple sequence alignment