Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   MKY11_RS11585 Genome accession   NZ_CP152000
Coordinates   2255771..2256064 (-) Length   97 a.a.
NCBI ID   WP_024718841.1    Uniprot ID   -
Organism   Bacillus sp. FSL W7-1085     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2250771..2261064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY11_RS11535 (MKY11_11535) sinR 2250935..2251270 (+) 336 WP_017357978.1 helix-turn-helix domain-containing protein Regulator
  MKY11_RS11540 (MKY11_11540) - 2251338..2252138 (-) 801 WP_008342195.1 TasA family protein -
  MKY11_RS11545 (MKY11_11545) - 2252197..2252769 (-) 573 WP_017357979.1 signal peptidase I -
  MKY11_RS11550 (MKY11_11550) tapA 2252819..2253346 (-) 528 WP_045034369.1 amyloid fiber anchoring/assembly protein TapA -
  MKY11_RS11555 (MKY11_11555) - 2253599..2253925 (+) 327 WP_235701742.1 DUF3889 domain-containing protein -
  MKY11_RS11560 (MKY11_11560) - 2253960..2254154 (-) 195 WP_268360764.1 YqzE family protein -
  MKY11_RS11565 (MKY11_11565) comGG 2254215..2254598 (-) 384 WP_326111027.1 competence type IV pilus minor pilin ComGG -
  MKY11_RS11570 (MKY11_11570) comGF 2254595..2255092 (-) 498 WP_342501422.1 competence type IV pilus minor pilin ComGF -
  MKY11_RS11575 (MKY11_11575) comGE 2255034..2255348 (-) 315 WP_007501227.1 competence type IV pilus minor pilin ComGE -
  MKY11_RS11580 (MKY11_11580) comGD 2255332..2255778 (-) 447 WP_096881621.1 competence type IV pilus minor pilin ComGD -
  MKY11_RS11585 (MKY11_11585) comGC 2255771..2256064 (-) 294 WP_024718841.1 competence type IV pilus major pilin ComGC Machinery gene
  MKY11_RS11590 (MKY11_11590) comGB 2256081..2257121 (-) 1041 WP_342501423.1 competence type IV pilus assembly protein ComGB -
  MKY11_RS11595 (MKY11_11595) comGA 2257102..2258172 (-) 1071 WP_035390817.1 competence type IV pilus ATPase ComGA Machinery gene
  MKY11_RS11600 (MKY11_11600) - 2258631..2259503 (-) 873 WP_342501424.1 STAS domain-containing protein -
  MKY11_RS11610 (MKY11_11610) - 2259728..2260108 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  MKY11_RS11615 (MKY11_11615) - 2260321..2260563 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10714.59 Da        Isoelectric Point: 6.7081

>NTDB_id=984298 MKY11_RS11585 WP_024718841.1 2255771..2256064(-) (comGC) [Bacillus sp. FSL W7-1085]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQSIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLS
CPNGKAIFIQNGDVKNE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=984298 MKY11_RS11585 WP_024718841.1 2255771..2256064(-) (comGC) [Bacillus sp. FSL W7-1085]
ATGAATGATAAAGGATTTACTCTGTTAGAGATGTTAATTGTCATGCTTGTGATCTCCATTCTTTTATTGATCACCATTCC
AAATATCACTCGGCATCATCAAAGCATTCAAGCAAAGGGCTGTGAAGGGCTGAAATCAATGGTGAGTACACAGGTAATGG
CATATGAATTAGAGCATGACGGCAAGACGCCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAAAGGATTATCT
TGTCCGAATGGAAAGGCAATTTTCATTCAAAACGGCGATGTGAAAAATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

67.01

100

0.67
  comGC Staphylococcus aureus MW2

40.217

94.845

0.381
  comGC Staphylococcus aureus N315

40.217

94.845

0.381

Multiple sequence alignment