Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MKY11_RS07760 Genome accession   NZ_CP152000
Coordinates   1530580..1531482 (+) Length   300 a.a.
NCBI ID   WP_342501986.1    Uniprot ID   -
Organism   Bacillus sp. FSL W7-1085     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1525580..1536482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY11_RS07740 (MKY11_07740) - 1526249..1527982 (+) 1734 WP_160757709.1 glycosyltransferase -
  MKY11_RS07745 (MKY11_07745) - 1527979..1528254 (+) 276 WP_008344827.1 FlhB-like flagellar biosynthesis protein -
  MKY11_RS07750 (MKY11_07750) sucC 1528431..1529591 (+) 1161 WP_008344824.1 ADP-forming succinate--CoA ligase subunit beta -
  MKY11_RS07755 (MKY11_07755) sucD 1529614..1530516 (+) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  MKY11_RS07760 (MKY11_07760) dprA 1530580..1531482 (+) 903 WP_342501986.1 DNA-processing protein DprA Machinery gene
  MKY11_RS07765 (MKY11_07765) topA 1531677..1533752 (+) 2076 WP_008344821.1 type I DNA topoisomerase -
  MKY11_RS07770 (MKY11_07770) trmFO 1533823..1535127 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MKY11_RS07775 (MKY11_07775) xerC 1535190..1536107 (+) 918 WP_039166693.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34071.46 Da        Isoelectric Point: 8.2776

>NTDB_id=984289 MKY11_RS07760 WP_342501986.1 1530580..1531482(+) (dprA) [Bacillus sp. FSL W7-1085]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRLLQKIDFTRLQQAEENEFPIFQHIVQAYLKQNIHM
VPITSPLYPSSLKHIYDPPPVLFLKGNVTYLNEEKSLGVVGTRVPSSYGEACVKKLVGELVEEDWMIVSGLAKGIDGLAH
KECIRKKGKTIGVVAGGFQHVYPKEHVQMAQYMGEHHLLLSEHPPYIKPEKWHFPMRNRLISALTRGTIVVQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDSNSIGPARLIQQGAKLVHSTKDILEEFSLSGVQYTELP

Nucleotide


Download         Length: 903 bp        

>NTDB_id=984289 MKY11_RS07760 WP_342501986.1 1530580..1531482(+) (dprA) [Bacillus sp. FSL W7-1085]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTCAAACAGGATCGATTATTACAAAAGATCGACTTTACCC
GCTTACAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAATATTCACATG
GTTCCCATCACATCACCTTTATATCCCAGCTCACTAAAACACATTTATGATCCTCCCCCAGTATTATTCCTAAAAGGAAA
CGTTACCTATTTAAATGAAGAAAAAAGTTTAGGTGTAGTAGGTACACGAGTGCCATCCTCTTATGGAGAAGCGTGCGTGA
AGAAACTTGTTGGAGAACTTGTAGAGGAAGATTGGATGATTGTGAGTGGTTTAGCAAAAGGAATTGATGGACTTGCACAC
AAAGAGTGCATAAGAAAAAAAGGAAAAACGATTGGTGTTGTAGCTGGCGGCTTTCAACATGTATATCCAAAAGAACATGT
GCAAATGGCTCAATATATGGGAGAACATCATTTACTGTTGTCAGAGCATCCGCCTTATATCAAACCAGAAAAATGGCATT
TTCCAATGAGAAACAGATTAATTAGTGCCCTGACAAGAGGAACCATCGTGGTCCAGTGCAAAGAAAAGAGCGGTTCGCTT
ATTACAGCCTACCAGGCATTAGAGCAAGGAAAAGAAGTGTTTGCTGTTGCAGGATCGATCTTTGATTCTAATTCTATAGG
TCCAGCTAGACTGATTCAGCAAGGTGCCAAGCTTGTTCATTCAACGAAGGATATTTTAGAGGAATTCTCCTTGAGTGGTG
TTCAATATACTGAACTCCCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.704

95.667

0.523
  dprA Legionella pneumophila strain ERS1305867

37.377

100

0.38
  dprA Lactococcus lactis subsp. cremoris KW2

39.373

95.667

0.377

Multiple sequence alignment