Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MKY08_RS22175 Genome accession   NZ_CP151996
Coordinates   4538072..4538644 (-) Length   190 a.a.
NCBI ID   WP_024364645.1    Uniprot ID   A0A4U2Z4N7
Organism   Lysinibacillus sp. FSL M8-0337     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4533072..4543644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY08_RS22150 (MKY08_22150) - 4533945..4534637 (-) 693 WP_081328063.1 ATP-binding cassette domain-containing protein -
  MKY08_RS22155 (MKY08_22155) - 4534630..4535916 (-) 1287 WP_069514057.1 hypothetical protein -
  MKY08_RS22160 (MKY08_22160) - 4535913..4536845 (-) 933 WP_069514055.1 hypothetical protein -
  MKY08_RS22165 (MKY08_22165) - 4537136..4537555 (-) 420 WP_081328062.1 hypothetical protein -
  MKY08_RS22170 (MKY08_22170) rpsR 4537788..4538024 (-) 237 WP_010860721.1 30S ribosomal protein S18 -
  MKY08_RS22175 (MKY08_22175) ssbA 4538072..4538644 (-) 573 WP_024364645.1 single-stranded DNA-binding protein Machinery gene
  MKY08_RS22180 (MKY08_22180) rpsF 4538681..4538971 (-) 291 WP_024364644.1 30S ribosomal protein S6 -
  MKY08_RS22185 (MKY08_22185) - 4539145..4539708 (+) 564 WP_069514053.1 DUF3267 domain-containing protein -
  MKY08_RS22190 (MKY08_22190) - 4539734..4540774 (-) 1041 WP_069514050.1 acyl-CoA dehydrogenase family protein -
  MKY08_RS22195 (MKY08_22195) ychF 4540945..4542045 (-) 1101 WP_024364641.1 redox-regulated ATPase YchF -
  MKY08_RS22200 (MKY08_22200) - 4542403..4542603 (-) 201 WP_069514382.1 DUF951 domain-containing protein -
  MKY08_RS22205 (MKY08_22205) - 4542605..4543486 (-) 882 WP_069514048.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 20599.61 Da        Isoelectric Point: 4.9533

>NTDB_id=984103 MKY08_RS22175 WP_024364645.1 4538072..4538644(-) (ssbA) [Lysinibacillus sp. FSL M8-0337]
MINRVVLVGRLTKDPELRYTPNGIASTRFTVAVNRTFSNQQGEKEADFISCVAWRKQAENLANFMKKGSLIGVEGRIQTG
SYEGQDGKRVYTTDVVADSVQFLEPRSGGGAPASNQYGGQSYANSQPSYGGGQPQQQYGGAMPQQGSFGGGASYQQNQPP
MNQPNYTRVDEDPFANSKGPIEVSEDDLPF

Nucleotide


Download         Length: 573 bp        

>NTDB_id=984103 MKY08_RS22175 WP_024364645.1 4538072..4538644(-) (ssbA) [Lysinibacillus sp. FSL M8-0337]
ATGATAAATCGTGTCGTATTAGTTGGAAGACTAACAAAAGACCCTGAGCTGCGCTACACACCGAATGGTATTGCGTCTAC
TCGATTTACTGTAGCTGTAAATCGTACATTCTCAAACCAACAAGGTGAAAAAGAAGCAGATTTCATTAGCTGTGTTGCTT
GGCGTAAACAGGCTGAAAACTTAGCGAACTTCATGAAAAAAGGAAGTTTGATTGGAGTAGAAGGTCGTATCCAAACAGGT
AGCTATGAAGGACAAGATGGTAAGCGTGTATATACAACTGATGTTGTGGCAGATAGCGTACAGTTTTTAGAGCCTCGTAG
TGGTGGAGGTGCTCCTGCATCGAACCAATACGGTGGACAATCTTACGCTAATAGCCAGCCGTCATATGGCGGTGGACAAC
CACAACAACAGTATGGTGGCGCGATGCCTCAGCAAGGTTCATTTGGCGGCGGTGCTTCTTATCAGCAAAATCAACCACCA
ATGAACCAGCCGAACTATACAAGAGTAGACGAAGATCCATTTGCGAATAGCAAGGGACCGATTGAAGTATCAGAAGACGA
TCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4U2Z4N7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.737

100

0.547
  ssb Latilactobacillus sakei subsp. sakei 23K

48.969

100

0.5

Multiple sequence alignment