Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MKY76_RS23430 Genome accession   NZ_CP151995
Coordinates   4644353..4644919 (-) Length   188 a.a.
NCBI ID   WP_048395233.1    Uniprot ID   A0AAE8QKV7
Organism   Lysinibacillus sp. FSL P4-0201     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4639353..4649919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY76_RS23410 (MKY76_23410) rplI 4640455..4640901 (-) 447 WP_004233368.1 50S ribosomal protein L9 -
  MKY76_RS23415 (MKY76_23415) - 4640901..4642871 (-) 1971 WP_004233367.1 DHH family phosphoesterase -
  MKY76_RS23420 (MKY76_23420) - 4642885..4643826 (-) 942 WP_066038355.1 YybS family protein -
  MKY76_RS23425 (MKY76_23425) rpsR 4644076..4644312 (-) 237 WP_012296211.1 30S ribosomal protein S18 -
  MKY76_RS23430 (MKY76_23430) ssbA 4644353..4644919 (-) 567 WP_048395233.1 single-stranded DNA-binding protein Machinery gene
  MKY76_RS23435 (MKY76_23435) rpsF 4644963..4645250 (-) 288 WP_016992320.1 30S ribosomal protein S6 -
  MKY76_RS23440 (MKY76_23440) - 4645427..4645996 (+) 570 WP_103119041.1 DUF3267 domain-containing protein -
  MKY76_RS23445 (MKY76_23445) - 4646064..4647104 (-) 1041 WP_342557228.1 acyl-CoA dehydrogenase -
  MKY76_RS23450 (MKY76_23450) ychF 4647190..4648290 (-) 1101 WP_016994923.1 redox-regulated ATPase YchF -
  MKY76_RS23455 (MKY76_23455) - 4648388..4648588 (-) 201 WP_048395226.1 DUF951 domain-containing protein -
  MKY76_RS23460 (MKY76_23460) - 4648590..4649462 (-) 873 WP_342546954.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20507.48 Da        Isoelectric Point: 4.7719

>NTDB_id=984067 MKY76_RS23430 WP_048395233.1 4644353..4644919(-) (ssbA) [Lysinibacillus sp. FSL P4-0201]
MINRVVLVGRLTKDPELRYTPNGVASTRFTVAVNRAFSNQQGEREADFISCVAWRKQAENLANFMRKGSLIGVEGRIQTG
SYEGQDGKRVYTTDVVADSVQFLEPRNGSGAPAPQYGGQTYGNNQPSYGGGQPQQQFGGAMPGQGSYGGDSYQQNQPPMN
QPNYTRVDEDPFANSKGPIEVSEDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=984067 MKY76_RS23430 WP_048395233.1 4644353..4644919(-) (ssbA) [Lysinibacillus sp. FSL P4-0201]
ATGATTAACCGTGTCGTATTAGTTGGAAGACTAACAAAAGATCCTGAGCTACGTTATACACCGAATGGAGTTGCGTCTAC
AAGATTTACAGTAGCTGTAAACCGTGCATTCTCAAATCAACAAGGTGAACGCGAAGCTGATTTCATTAGCTGTGTTGCTT
GGCGTAAACAGGCTGAAAACCTAGCGAACTTCATGCGAAAAGGAAGTTTAATTGGGGTAGAAGGTCGTATCCAGACAGGC
AGTTATGAAGGACAAGATGGTAAGCGAGTATACACAACAGATGTCGTGGCGGATAGCGTACAGTTTTTAGAACCCCGTAA
TGGTAGCGGTGCTCCTGCTCCTCAATATGGTGGACAAACTTACGGTAATAACCAACCGTCATATGGCGGTGGTCAACCAC
AACAACAGTTTGGTGGCGCTATGCCAGGGCAGGGTTCCTATGGCGGCGATTCGTATCAGCAAAATCAACCACCTATGAAT
CAGCCAAATTATACACGTGTAGATGAGGATCCATTTGCAAATAGCAAAGGGCCAATAGAAGTATCTGAGGATGATCTTCC
ATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.211

100

0.548
  ssb Latilactobacillus sakei subsp. sakei 23K

47.872

100

0.479

Multiple sequence alignment