Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NSQ70_RS07860 Genome accession   NZ_CP151992
Coordinates   1554135..1555037 (+) Length   300 a.a.
NCBI ID   WP_041507310.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0397     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1549135..1560037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ70_RS07840 (NSQ70_07840) - 1549804..1551537 (+) 1734 WP_342502536.1 glycosyltransferase -
  NSQ70_RS07845 (NSQ70_07845) - 1551534..1551809 (+) 276 WP_008344827.1 FlhB-like flagellar biosynthesis protein -
  NSQ70_RS07850 (NSQ70_07850) sucC 1551986..1553146 (+) 1161 WP_008344824.1 ADP-forming succinate--CoA ligase subunit beta -
  NSQ70_RS07855 (NSQ70_07855) sucD 1553169..1554071 (+) 903 WP_072367269.1 succinate--CoA ligase subunit alpha -
  NSQ70_RS07860 (NSQ70_07860) dprA 1554135..1555037 (+) 903 WP_041507310.1 DNA-processing protein DprA Machinery gene
  NSQ70_RS07865 (NSQ70_07865) topA 1555232..1557307 (+) 2076 WP_342502537.1 type I DNA topoisomerase -
  NSQ70_RS07870 (NSQ70_07870) trmFO 1557378..1558682 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NSQ70_RS07875 (NSQ70_07875) xerC 1558745..1559662 (+) 918 WP_342502538.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34058.42 Da        Isoelectric Point: 8.5979

>NTDB_id=983919 NSQ70_RS07860 WP_041507310.1 1554135..1555037(+) (dprA) [Bacillus sp. FSL R5-0397]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRSLQKIDFTRLQQAEENEFPIFQHIVQAYLKQNIHM
IPITSPLYPSSLKHIYDPPPVLFLKGNVTYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVEENWMIVSGLAKGIDGLAH
KECIRKKGKTIGVVAGGFQHVYPKEHVQMAQYMGEHHLLLSEHPPYIKPEKWHFPMRNRLISALTRGTIVVQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDSNSIGPARLIQQGAKLVHSTKDILEEFSLSGVQYTELP

Nucleotide


Download         Length: 903 bp        

>NTDB_id=983919 NSQ70_RS07860 WP_041507310.1 1554135..1555037(+) (dprA) [Bacillus sp. FSL R5-0397]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTCAAACAGGATCGATCATTACAAAAGATCGACTTTACCC
GCTTACAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAATATTCACATG
ATTCCCATCACATCACCTTTATATCCCAGCTCACTAAAACACATTTATGATCCTCCCCCAGTATTATTCCTAAAAGGAAA
CGTTACCTATTTAAATGAAGAAAAAAGTCTAGGTGTAGTAGGTACACGAGTGCCATCCTCTTACGGAGAAGCGTGCGTGA
AGAAAATTGTTGGAGAACTTGTAGAGGAGAATTGGATGATTGTGAGTGGTTTAGCAAAAGGAATTGATGGACTTGCACAC
AAAGAGTGCATAAGAAAAAAAGGAAAAACGATTGGTGTTGTAGCTGGCGGCTTTCAACATGTATATCCAAAAGAACATGT
GCAAATGGCTCAATATATGGGAGAACATCATTTACTGTTGTCAGAGCATCCGCCTTATATCAAACCAGAAAAATGGCATT
TTCCAATGAGAAACAGATTAATTAGTGCCCTGACAAGAGGAACCATCGTGGTCCAGTGCAAAGAAAAGAGCGGTTCGCTT
ATTACAGCCTACCAGGCATTAGAGCAAGGAAAAGAAGTGTTTGCTGTTGCAGGATCGATCTTTGATTCTAATTCTATAGG
TCCAGCTAGACTGATTCAGCAAGGTGCCAAGCTTGTTCATTCAACGAAGGATATTTTAGAGGAATTCTCCTTGAGTGGTG
TTCAATATACTGAACTCCCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.704

95.667

0.523
  dprA Legionella pneumophila strain ERS1305867

37.377

100

0.38
  dprA Lactococcus lactis subsp. cremoris KW2

39.721

95.667

0.38

Multiple sequence alignment