Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NST15_RS07850 Genome accession   NZ_CP151991
Coordinates   1537454..1538356 (+) Length   300 a.a.
NCBI ID   WP_017367240.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0820     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1532454..1543356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST15_RS07830 (NST15_07830) - 1533123..1534856 (+) 1734 WP_216942307.1 glycosyltransferase -
  NST15_RS07835 (NST15_07835) - 1534853..1535128 (+) 276 WP_008344827.1 FlhB-like flagellar biosynthesis protein -
  NST15_RS07840 (NST15_07840) sucC 1535305..1536465 (+) 1161 WP_008344824.1 ADP-forming succinate--CoA ligase subunit beta -
  NST15_RS07845 (NST15_07845) sucD 1536488..1537390 (+) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  NST15_RS07850 (NST15_07850) dprA 1537454..1538356 (+) 903 WP_017367240.1 DNA-processing protein DprA Machinery gene
  NST15_RS07855 (NST15_07855) topA 1538551..1540626 (+) 2076 WP_046526653.1 type I DNA topoisomerase -
  NST15_RS07860 (NST15_07860) trmFO 1540697..1542001 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NST15_RS07865 (NST15_07865) xerC 1542064..1542981 (+) 918 WP_007499616.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34063.39 Da        Isoelectric Point: 8.2776

>NTDB_id=983857 NST15_RS07850 WP_017367240.1 1537454..1538356(+) (dprA) [Bacillus sp. FSL R5-0820]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRSLQKIDFTRLQQAEENEFPIFQHIVQAYLKQNIHM
IPITSPLYPSSLKHIYDPPPVLFLKGNVTYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVEEDWMIVSGLAKGIDGLAH
KECIRKKGKTIGVVAGGFQHVYPKEHVQMAQYMGEHHLLLSEHPPYIKPEKWHFPMRNRLISALTRGTIVVQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDSNSIGPARLIQQGAKLVHSTKDILEEFSLSGVQYTELT

Nucleotide


Download         Length: 903 bp        

>NTDB_id=983857 NST15_RS07850 WP_017367240.1 1537454..1538356(+) (dprA) [Bacillus sp. FSL R5-0820]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTCAAACAGGATCGATCATTACAAAAGATCGACTTTACCC
GCTTACAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAATATTCACATG
ATTCCCATCACATCACCTTTATATCCCAGCTCACTAAAACACATTTATGATCCTCCCCCAGTATTATTCCTAAAAGGAAA
CGTTACCTATTTAAATGAAGAAAAAAGTTTAGGTGTAGTAGGTACACGTGTGCCATCCTCTTACGGAGAAGCGTGCGTGA
AGAAAATTGTTGGAGAACTTGTAGAGGAAGATTGGATGATTGTGAGTGGTTTAGCAAAAGGAATTGATGGACTTGCACAC
AAAGAGTGCATAAGAAAAAAAGGAAAAACGATTGGTGTTGTAGCTGGCGGCTTTCAACATGTATATCCAAAAGAACATGT
GCAAATGGCTCAATATATGGGAGAACATCATTTACTGTTGTCAGAGCATCCGCCTTATATCAAACCAGAAAAATGGCATT
TTCCAATGAGAAACCGATTAATTAGTGCCCTGACAAGAGGAACCATCGTGGTTCAGTGCAAAGAAAAGAGCGGATCGCTT
ATTACAGCCTATCAGGCATTAGAGCAAGGAAAAGAAGTGTTTGCTGTTGCAGGATCGATCTTTGATTCTAATTCTATAGG
TCCAGCTAGACTGATTCAGCAAGGTGCCAAGCTTGTTCATTCAACGAAGGATATTTTAGAGGAATTCTCCTTGAGCGGTG
TTCAATATACTGAACTCACATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.704

95.667

0.523
  dprA Legionella pneumophila strain ERS1305867

37.377

100

0.38
  dprA Lactococcus lactis subsp. cremoris KW2

39.721

95.667

0.38

Multiple sequence alignment