Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NSQ30_RS17910 Genome accession   NZ_CP151990
Coordinates   3409351..3410730 (-) Length   459 a.a.
NCBI ID   WP_142671660.1    Uniprot ID   -
Organism   Bacillus sp. FSL R7-0651     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3404351..3415730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ30_RS17875 (NSQ30_17875) flgL 3404531..3405442 (-) 912 WP_044139340.1 flagellar hook-associated protein FlgL -
  NSQ30_RS17880 (NSQ30_17880) flgK 3405452..3406972 (-) 1521 WP_044139339.1 flagellar hook-associated protein FlgK -
  NSQ30_RS17885 (NSQ30_17885) - 3406988..3407470 (-) 483 WP_034660146.1 flagellar protein FlgN -
  NSQ30_RS17890 (NSQ30_17890) flgM 3407489..3407752 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  NSQ30_RS17895 (NSQ30_17895) - 3407832..3408251 (-) 420 WP_044139338.1 TIGR03826 family flagellar region protein -
  NSQ30_RS17900 (NSQ30_17900) comFC 3408308..3408994 (-) 687 WP_181462031.1 ComF family protein Machinery gene
  NSQ30_RS17905 (NSQ30_17905) - 3408991..3409284 (-) 294 WP_044139337.1 competence protein ComFB -
  NSQ30_RS17910 (NSQ30_17910) comFA 3409351..3410730 (-) 1380 WP_142671660.1 DEAD/DEAH box helicase Machinery gene
  NSQ30_RS17915 (NSQ30_17915) - 3410850..3411692 (-) 843 WP_044139336.1 DegV family protein -
  NSQ30_RS17920 (NSQ30_17920) degU 3411910..3412599 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  NSQ30_RS17925 (NSQ30_17925) degS 3412664..3413839 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  NSQ30_RS17930 (NSQ30_17930) - 3414061..3414729 (+) 669 WP_003212936.1 YigZ family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52475.42 Da        Isoelectric Point: 10.0795

>NTDB_id=983822 NSQ30_RS17910 WP_142671660.1 3409351..3410730(-) (comFA) [Bacillus sp. FSL R7-0651]
MNMDKAMELGQHLQSRHLLTAETRCSQSDLDWLEEKGLVIRTPAIERKANGLICCRCGVSKNRYFAHSPCDKCQKDCVYC
RSCIMMGKTTECGFLYEWTGPQMEEACHSELTWQGDLSKGQKRASEKLIEAIKHKSDLLIWAVCGAGKTEVLFHGIEYAL
HQGMSVCIATPRTDVVLELEPRLKKAFQGMKIAVLYGGSPQRFQIAPLVIATTHQLMRYKHAFDVLIIDEVDAFPYSIDE
RLQFAVLKAMRKKGVRVYLSATPSKKMIRDVSRGQLEAVKIPLRFHQQPLPVPSFQWIGHWKKKLKKNQLPPKVMNWMQK
HITKKRRVLLFVPSISTMKKVTKVLRKHHLNVEGVSADDPDRKQKVQQFRDYKYDVLVTTTILERGVTIPNVQVGVLGAE
STIFTESALVQISGRAGRHPDFFKGDVFFFHFGLTRSMKQAKKHIVKMNDTAEKEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=983822 NSQ30_RS17910 WP_142671660.1 3409351..3410730(-) (comFA) [Bacillus sp. FSL R7-0651]
TTGAACATGGACAAAGCAATGGAACTAGGGCAACACCTGCAGTCACGCCACCTGCTTACTGCTGAAACAAGATGCTCACA
GTCTGATTTGGATTGGCTGGAGGAGAAAGGGTTAGTTATCCGAACACCTGCTATTGAGAGGAAAGCAAATGGTCTTATTT
GCTGCAGATGTGGTGTATCAAAAAATCGGTACTTTGCCCACTCTCCGTGTGACAAGTGTCAAAAAGATTGTGTGTATTGT
AGATCATGCATCATGATGGGGAAAACAACGGAATGTGGCTTTCTTTATGAATGGACGGGTCCACAAATGGAAGAAGCATG
TCACTCGGAATTAACATGGCAGGGAGACCTGTCTAAAGGACAAAAAAGAGCGTCAGAAAAATTGATAGAAGCGATAAAAC
ACAAATCTGATCTACTCATCTGGGCAGTTTGCGGGGCAGGGAAAACAGAGGTGCTTTTTCACGGAATAGAATATGCCTTA
CATCAAGGAATGAGTGTCTGCATTGCGACACCTAGAACTGATGTTGTACTTGAACTAGAGCCGCGGCTTAAAAAAGCTTT
TCAAGGAATGAAAATAGCTGTTCTTTATGGAGGAAGTCCTCAAAGGTTCCAAATAGCACCGTTAGTAATCGCTACAACTC
ACCAGTTGATGAGATATAAACATGCATTTGATGTGCTCATTATAGATGAAGTCGATGCCTTCCCTTATTCAATCGATGAA
CGTCTCCAATTTGCTGTTTTAAAGGCAATGAGAAAGAAAGGGGTTAGGGTTTATTTAAGTGCGACGCCGTCTAAGAAAAT
GATAAGAGATGTATCTCGTGGACAACTAGAAGCCGTAAAAATTCCTCTGCGCTTTCACCAACAGCCTTTACCGGTCCCAT
CCTTTCAATGGATTGGACATTGGAAGAAGAAATTAAAAAAGAATCAGCTCCCACCTAAAGTAATGAATTGGATGCAGAAA
CATATTACAAAAAAGAGAAGGGTTTTACTTTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACGAAGGTTCTTAGAAA
GCACCACTTAAATGTAGAAGGGGTGTCTGCTGATGATCCGGACAGGAAACAAAAGGTCCAGCAATTCAGAGATTACAAAT
ACGATGTACTAGTTACAACCACAATTCTAGAAAGAGGCGTAACCATTCCAAATGTGCAAGTAGGGGTACTAGGTGCAGAA
TCTACTATCTTTACAGAAAGTGCACTTGTTCAGATTTCTGGTAGAGCAGGTAGACATCCCGATTTTTTTAAAGGAGATGT
TTTCTTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAGCATATTGTAAAAATGAATGATACAGCTGAAA
AAGAGTTCTCCGAAAAATAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(320-419)

Type III restriction enzyme, res subunit (ResIII)

(117-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

54.505

99.129

0.54

Multiple sequence alignment