Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NSQ30_RS16250 Genome accession   NZ_CP151990
Coordinates   3081483..3082124 (-) Length   213 a.a.
NCBI ID   WP_003213500.1    Uniprot ID   A0AB34QVB6
Organism   Bacillus sp. FSL R7-0651     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3076483..3087124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ30_RS16215 (NSQ30_16215) - 3077594..3078025 (+) 432 WP_034317176.1 Na(+)/H(+) antiporter subunit B -
  NSQ30_RS16220 (NSQ30_16220) - 3078025..3078366 (+) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  NSQ30_RS16225 (NSQ30_16225) - 3078359..3079837 (+) 1479 WP_342487451.1 Na+/H+ antiporter subunit D -
  NSQ30_RS16230 (NSQ30_16230) - 3079844..3080323 (+) 480 WP_003213059.1 Na+/H+ antiporter subunit E -
  NSQ30_RS16235 (NSQ30_16235) - 3080323..3080604 (+) 282 WP_113768029.1 Na(+)/H(+) antiporter subunit F1 -
  NSQ30_RS16240 (NSQ30_16240) mnhG 3080588..3080962 (+) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  NSQ30_RS16245 (NSQ30_16245) - 3081070..3081459 (-) 390 WP_003213775.1 hotdog fold thioesterase -
  NSQ30_RS16250 (NSQ30_16250) comA 3081483..3082124 (-) 642 WP_003213500.1 response regulator transcription factor Regulator
  NSQ30_RS16255 (NSQ30_16255) comP 3082205..3084511 (-) 2307 WP_044140820.1 ATP-binding protein Regulator
  NSQ30_RS16260 (NSQ30_16260) comX 3084525..3084695 (-) 171 WP_012011107.1 competence pheromone ComX -
  NSQ30_RS16265 (NSQ30_16265) - 3084673..3085596 (-) 924 WP_106029260.1 polyprenyl synthetase family protein -
  NSQ30_RS16270 (NSQ30_16270) degQ 3085748..3085888 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  NSQ30_RS16275 (NSQ30_16275) - 3086394..3086747 (+) 354 WP_113768032.1 inner spore coat protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24155.54 Da        Isoelectric Point: 4.5204

>NTDB_id=983815 NSQ30_RS16250 WP_003213500.1 3081483..3082124(-) (comA) [Bacillus sp. FSL R7-0651]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQETDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=983815 NSQ30_RS16250 WP_003213500.1 3081483..3082124(-) (comA) [Bacillus sp. FSL R7-0651]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATTTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAACAAATTCTAGAAACCAACCAACAAGTGAAAATCATC
ATTTATACAGGGTATGAAGTAGATGATTATTTTGAAGAGGCCATTCGGGCTGGATTGCACGGTGCAATTAGTAAAACAGA
GACAAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGGAGACCGATCACGAGCTGTTAACAGAGCGAGAGTGTTTGATC
CTCAGAGAAGTGGAAAAAGGATACACGAACCAAGAGATTGCCGATGTGCTGCATTTGAGCAAACGCTCGATTGAATACAG
CTTGACGTCCATCTTTAATAAGCTGAATGTTGGCTCTCGAACCGAAGCGGTGTTAATTGCAAAATCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.028

100

0.714

Multiple sequence alignment