Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   R8507_RS09785 Genome accession   NZ_AP026925
Coordinates   1883884..1884837 (-) Length   317 a.a.
NCBI ID   WP_000345100.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700097     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1878884..1889837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8507_RS09755 (PC0094_19070) - 1879645..1880268 (-) 624 WP_000932660.1 hypothetical protein -
  R8507_RS09760 (PC0094_19080) jag 1880319..1881305 (-) 987 WP_000260018.1 RNA-binding cell elongation regulator Jag/EloR -
  R8507_RS09765 (PC0094_19090) - 1881324..1882148 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  R8507_RS09770 (PC0094_19100) rnpA 1882123..1882494 (-) 372 WP_000739246.1 ribonuclease P protein component -
  R8507_RS09775 - 1882511..1882642 (-) 132 WP_000768904.1 hypothetical protein -
  R8507_RS09780 (PC0094_19110) - 1882643..1883833 (-) 1191 WP_000167766.1 acetate kinase -
  R8507_RS09785 (PC0094_19120) comYH 1883884..1884837 (-) 954 WP_000345100.1 class I SAM-dependent methyltransferase Machinery gene
  R8507_RS09790 - 1884898..1885492 (-) 595 Protein_1904 class I SAM-dependent methyltransferase -
  R8507_RS09795 (PC0094_19150) comGG/cglG 1885629..1886042 (-) 414 WP_000265622.1 competence type IV pilus minor pilin ComGG Machinery gene
  R8507_RS09800 (PC0094_19160) comGF/cglF 1886020..1886481 (-) 462 WP_000250534.1 competence type IV pilus minor pilin ComGF Machinery gene
  R8507_RS09805 (PC0094_19170) comGE/cglE 1886444..1886746 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  R8507_RS09810 (PC0094_19180) comGD/cglD 1886709..1887113 (-) 405 WP_000588026.1 competence type IV pilus minor pilin ComGD Machinery gene
  R8507_RS09815 (PC0094_19190) comGC/cglC 1887106..1887432 (-) 327 WP_000738626.1 comG operon protein ComGC Machinery gene
  R8507_RS09820 (PC0094_19200) comGB/cglB 1887434..1888450 (-) 1017 WP_074196785.1 competence type IV pilus assembly protein ComGB Machinery gene
  R8507_RS09825 (PC0094_19210) comGA/cglA/cilD 1888398..1889339 (-) 942 WP_016398028.1 competence type IV pilus ATPase ComGA Machinery gene
  R8507_RS09830 (PC0094_19220) - 1889415..1889780 (-) 366 WP_000286415.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35687.93 Da        Isoelectric Point: 4.2995

>NTDB_id=98375 R8507_RS09785 WP_000345100.1 1883884..1884837(-) (comYH) [Streptococcus pneumoniae strain PZ900700097]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELEQVKDNNQTLKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGATFLTSLTKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SNLLKVWLKEEASLVAMISLPENLFANAKQSKTIFILQKKSEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=98375 R8507_RS09785 WP_000345100.1 1883884..1884837(-) (comYH) [Streptococcus pneumoniae strain PZ900700097]
ATGGATTTTGAAAAAATTGAACAAGCTTATACCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAACAGCATCTATCTGGATGGTGAGACTGAGCTAGAACAGGTCAAAGACAACAATC
AGACCCTTAAGCGTTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACACCGGATGCTATTGCTTTACTTTTGGTGTTTATTGTGGAAGAGCTGTTTAA
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTTTGGGCGCTACTTTCTTGACCTCGCTTACTAAAA
AGGTGGATTATTTGGGAATGGAAGTGGATGATTTGCTGATTGATTTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGTGATGTGGTCATCAGCGACTTGCCTGTTGG
CTATTATCCTGATGATGCCGTTGCGTCGCGCCATCAAGTTGCTTCTAGTCAAGAACATACTTACGCCCATCACTTGCTCA
TGGAACAAGGACTTAAGTACCTCAAGTCAGACGGATACGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTAATTTGTTGAAAGTCTGGTTGAAAGAGGAGGCAAGTCTGGTTGCTATGATTAGTTTACCTGAAAATCTCTTTGCTAA
TGCTAAACAATCTAAGACTATTTTTATCCTACAGAAGAAAAGTGAAATAGCAGTAGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

54.952

98.738

0.543
  comYH Streptococcus mutans UA159

54.633

98.738

0.539

Multiple sequence alignment