Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NST09_RS11265 Genome accession   NZ_CP151988
Coordinates   2197792..2199525 (-) Length   577 a.a.
NCBI ID   WP_249668910.1    Uniprot ID   -
Organism   Bacillus sp. FSL W7-1346     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2192792..2204525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST09_RS11250 (NST09_11250) - 2193679..2194779 (-) 1101 WP_019743381.1 Rap family tetratricopeptide repeat protein -
  NST09_RS11255 (NST09_11255) spo0A 2195229..2196032 (-) 804 WP_008342226.1 sporulation transcription factor Spo0A Regulator
  NST09_RS11260 (NST09_11260) spoIVB 2196316..2197593 (-) 1278 WP_007501161.1 SpoIVB peptidase -
  NST09_RS11265 (NST09_11265) recN 2197792..2199525 (-) 1734 WP_249668910.1 DNA repair protein RecN Machinery gene
  NST09_RS11270 (NST09_11270) argR 2199560..2200009 (-) 450 WP_217815928.1 transcriptional regulator ArgR -
  NST09_RS11275 (NST09_11275) - 2200376..2201230 (-) 855 WP_007501164.1 TlyA family RNA methyltransferase -
  NST09_RS11280 (NST09_11280) dxs 2201227..2203128 (-) 1902 WP_342493014.1 1-deoxy-D-xylulose-5-phosphate synthase -
  NST09_RS11285 (NST09_11285) - 2203280..2204170 (-) 891 WP_342493015.1 polyprenyl synthetase family protein -
  NST09_RS11290 (NST09_11290) - 2204160..2204420 (-) 261 WP_003215880.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64571.46 Da        Isoelectric Point: 4.7424

>NTDB_id=983680 NST09_RS11265 WP_249668910.1 2197792..2199525(-) (recN) [Bacillus sp. FSL W7-1346]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPADHPVFALC
EEQGIDASDEMMILRRDINQSGKSICRINGKLVTISILREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGADEIAPALS
QYQEAYDQYMKTAQKLKQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDEKLQEERHQISNFEKIFSSLQNAYNALRNE
QGGLDWVGMASSELEQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTTV
EEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAISRDALLEALNVSELRKKWAKKLAKHIQAELKDLYMEKSSFDTAFTI
RYAPFGSTDCPLLDGKPVQLGKNGIDQAQFVISTNPGEPMKSLSKVASGGEISRVMLAVKSIFSAKQEVTSIIFDEVDTG
VSGRVAQAIAEKIYKVAAGSQVLCITHLPQVAAMADTHLFISKRAKAGRTMTNVKPLSDDEKVSEIGRMIAGVEVTELTK
QHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=983680 NST09_RS11265 WP_249668910.1 2197792..2199525(-) (recN) [Bacillus sp. FSL W7-1346]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAGGAGTTAACGGTTTCGTTTGAAAAAGGACTCACAGTTCT
AACAGGGGAAACAGGTGCCGGAAAATCAATCATGATTGACGCTGTCTCACTTCTCGTAGGGGGAAGAGGATCATCCGAAT
TTGTCCGTTATGGCGAAAAAAAAGCAGAGCTGGAAGGTCTTTTTCTTGTACCAGCAGATCATCCTGTATTTGCCCTTTGC
GAGGAGCAAGGAATTGATGCATCTGATGAAATGATGATTCTTCGCCGTGATATCAATCAAAGCGGGAAAAGCATTTGCCG
CATTAATGGTAAGCTTGTCACCATCTCGATTTTAAGAGAAGTTGGCCGGCTTTTGCTTGATATACATGGACAGCACGATA
ATCAGCTGTTAATGGAGGATGAAAATCATTTGCATTTGCTTGATCAATTTGGAGCAGATGAAATTGCACCTGCTCTCTCG
CAGTATCAAGAAGCGTATGATCAATATATGAAGACGGCGCAAAAACTCAAACAGCTGTCTGAAAATGAACAAGAAATGGT
TCATCGGTTAGACTTATTGCAATTTCAGCTGGAAGAGATTGAAGCGGCACAATTAGAGCCTGGGGAAGATGAGAAGCTTC
AAGAGGAACGTCATCAAATCAGCAATTTTGAAAAAATCTTTTCCTCGCTTCAAAATGCATATAATGCTCTGCGTAATGAG
CAGGGAGGACTTGATTGGGTTGGGATGGCTTCAAGCGAGCTTGAGCAAGTTTCTGAAATCAACGACGATCTGAAAAAGCT
CTCTGAGCAAGTGTCAAACTCCTATTATTTATTAGAAGATTCTACTTTTCAAATGCGCAGCATGCTTGATCAATTAGAAT
TTGACCCAGCCCGTCTTGATTTTATTGAGTCTAGACTAAATGAGATGAAGCAGCTGAAGCGAAAATACGGCACAACCGTT
GAGGAAATTTTAGAATATGCGGCTAAGATTGAAGAGGAGATAGACCAAATCCAAAATCGAGACAGCCATTTGCAGACACT
TAAAAACAAACTTGATGCGATAAGCCGGGATGCATTGCTTGAAGCGCTCAACGTGTCAGAGCTCCGTAAAAAATGGGCGA
AAAAACTGGCGAAGCACATTCAAGCTGAATTGAAGGATTTATATATGGAGAAGTCTTCTTTTGATACCGCTTTTACGATT
CGATATGCACCTTTTGGCAGTACGGACTGCCCGCTTTTAGATGGAAAACCCGTACAGCTCGGGAAAAATGGCATAGATCA
AGCGCAATTTGTCATTTCTACAAATCCGGGTGAACCGATGAAATCTTTGTCAAAAGTAGCATCTGGAGGAGAAATTTCAC
GTGTCATGCTGGCAGTGAAAAGTATTTTCTCAGCGAAACAAGAAGTGACGTCCATTATATTTGATGAAGTGGATACGGGC
GTTAGCGGCAGAGTCGCACAAGCCATTGCTGAAAAAATTTATAAAGTAGCAGCAGGCTCACAAGTACTCTGTATTACCCA
TCTTCCGCAAGTCGCAGCAATGGCTGATACACATCTTTTTATTTCTAAACGCGCTAAAGCTGGTAGAACAATGACGAACG
TCAAACCACTAAGTGATGATGAAAAAGTGAGTGAAATCGGCCGAATGATTGCTGGTGTAGAAGTCACTGAGCTCACAAAA
CAGCATGCAAAAGAATTACTGCACCAAGCAAATGATGTCAAAACGACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

75.737

100

0.757

Multiple sequence alignment