Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   NSU13_RS11425 Genome accession   NZ_CP151986
Coordinates   2226229..2227299 (-) Length   356 a.a.
NCBI ID   WP_041117979.1    Uniprot ID   -
Organism   Bacillus sp. FSL M8-0049     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2221229..2232299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU13_RS11375 (NSU13_11375) - 2221323..2221895 (-) 573 WP_034280218.1 signal peptidase I -
  NSU13_RS11380 (NSU13_11380) tapA 2221948..2222475 (-) 528 WP_120208209.1 amyloid fiber anchoring/assembly protein TapA -
  NSU13_RS11385 (NSU13_11385) - 2222775..2223053 (+) 279 WP_061109527.1 DUF3889 domain-containing protein -
  NSU13_RS11390 (NSU13_11390) - 2223088..2223282 (-) 195 WP_120208337.1 YqzE family protein -
  NSU13_RS11395 (NSU13_11395) comGG 2223342..2223725 (-) 384 WP_211043251.1 competence type IV pilus minor pilin ComGG -
  NSU13_RS11400 (NSU13_11400) comGF 2223722..2224249 (-) 528 WP_342489525.1 competence type IV pilus minor pilin ComGF -
  NSU13_RS11405 (NSU13_11405) comGE 2224161..2224475 (-) 315 WP_264315972.1 competence type IV pilus minor pilin ComGE -
  NSU13_RS11410 (NSU13_11410) comGD 2224459..2224905 (-) 447 WP_342489526.1 competence type IV pilus minor pilin ComGD -
  NSU13_RS11415 (NSU13_11415) comGC 2224898..2225191 (-) 294 WP_024422977.1 competence type IV pilus major pilin ComGC Machinery gene
  NSU13_RS11420 (NSU13_11420) comGB 2225208..2226248 (-) 1041 WP_342489527.1 competence type IV pilus assembly protein ComGB -
  NSU13_RS11425 (NSU13_11425) comGA 2226229..2227299 (-) 1071 WP_041117979.1 competence type IV pilus ATPase ComGA Machinery gene
  NSU13_RS11430 (NSU13_11430) - 2227477..2228352 (-) 876 WP_024422979.1 STAS domain-containing protein -
  NSU13_RS11440 (NSU13_11440) - 2228576..2228956 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  NSU13_RS11445 (NSU13_11445) - 2229169..2229411 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -
  NSU13_RS11450 (NSU13_11450) - 2229458..2230096 (-) 639 WP_034280195.1 MBL fold metallo-hydrolase -
  NSU13_RS11455 (NSU13_11455) - 2230254..2230427 (+) 174 WP_003217333.1 DUF2759 domain-containing protein -
  NSU13_RS11460 (NSU13_11460) - 2230451..2230765 (-) 315 WP_024427984.1 MTH1187 family thiamine-binding protein -
  NSU13_RS11465 (NSU13_11465) - 2230842..2232095 (-) 1254 WP_046311764.1 MFS transporter -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40398.79 Da        Isoelectric Point: 9.4061

>NTDB_id=983560 NSU13_RS11425 WP_041117979.1 2226229..2227299(-) (comGA) [Bacillus sp. FSL M8-0049]
MYGIEYLRQELLEEACRMRASDVHIVPKEKEASVSFRVDSDLIQQRTIDKKSGERLIAHFKFLSSMDIGEKRRPQNGSLA
VMLRNGQVFIRMSTLPTVNDESLVIRILPQDHVPKIKHLSLFPKASARLLSFLNHSHGLILFTGPTNSGKTTTLYSLIQF
AKKNFNRNIITLEDPVETRNEEVLQVQVNEKAGITYAAGLRAILRHDPDVIVLGEIRDAETARTAIRAALTGHLVLSTLH
AKNAKGALYRMLEFGVTMNELEQTMVAIAAQRLIELTCPFCGERCQLYCKLNRPIRRTNVFELLFGKELGECIKEAKGEY
AHSSYETLQRLIRKGVALGYLSKNTYHRWVYEEASL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=983560 NSU13_RS11425 WP_041117979.1 2226229..2227299(-) (comGA) [Bacillus sp. FSL M8-0049]
TTGTATGGGATTGAATATTTAAGGCAAGAGCTGCTAGAAGAAGCATGCCGCATGAGGGCTTCTGATGTGCATATTGTGCC
AAAAGAAAAGGAAGCCTCGGTGTCATTTCGTGTTGATTCAGATTTAATCCAGCAGCGAACCATTGATAAAAAAAGCGGAG
AGAGGCTTATTGCACATTTTAAGTTTTTATCTTCTATGGATATCGGGGAAAAAAGGAGGCCGCAAAATGGCTCACTAGCT
GTGATGCTAAGAAACGGTCAAGTGTTTATTCGGATGTCTACCTTGCCGACAGTGAATGATGAGAGCTTAGTGATTAGAAT
TTTACCGCAGGATCATGTTCCGAAAATAAAACATCTATCATTATTTCCGAAAGCCTCAGCCAGATTATTATCCTTTTTAA
ACCACTCGCATGGACTCATTTTATTTACTGGGCCAACAAATTCAGGGAAAACAACAACACTATATTCATTGATTCAGTTT
GCAAAAAAGAATTTTAACCGAAATATTATTACCCTTGAAGATCCTGTCGAAACAAGGAATGAAGAAGTGCTGCAGGTTCA
AGTGAATGAAAAAGCCGGCATCACGTATGCCGCTGGATTACGCGCTATTTTAAGACATGATCCAGATGTGATTGTGCTAG
GAGAAATAAGAGATGCTGAAACGGCGAGAACGGCGATTAGAGCAGCACTGACAGGCCATTTAGTATTGAGTACGCTCCAT
GCAAAAAATGCAAAAGGAGCCCTTTACCGCATGCTTGAATTTGGTGTGACGATGAATGAACTTGAACAAACAATGGTTGC
GATTGCTGCCCAGCGATTAATCGAGCTTACCTGTCCTTTTTGCGGAGAAAGATGTCAGCTTTACTGTAAATTAAATCGAC
CGATCAGACGAACAAATGTATTTGAGCTGCTGTTCGGAAAAGAGCTTGGTGAGTGTATCAAGGAGGCTAAAGGAGAATAT
GCTCACTCGTCATATGAAACACTGCAAAGATTAATTCGTAAAGGAGTGGCACTCGGCTATTTATCAAAAAACACTTACCA
TCGCTGGGTTTATGAAGAAGCGAGCCTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

64.689

99.438

0.643

Multiple sequence alignment