Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   NSU13_RS05125 Genome accession   NZ_CP151986
Coordinates   1017895..1018473 (+) Length   192 a.a.
NCBI ID   WP_041117040.1    Uniprot ID   -
Organism   Bacillus sp. FSL M8-0049     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1012895..1023473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU13_RS05105 (NSU13_05105) - 1013390..1014685 (-) 1296 WP_342489908.1 globin-coupled sensor protein -
  NSU13_RS05110 (NSU13_05110) - 1014779..1016311 (-) 1533 WP_328699310.1 FAD-dependent oxidoreductase -
  NSU13_RS05115 (NSU13_05115) - 1016453..1017313 (+) 861 WP_034282185.1 SDR family oxidoreductase -
  NSU13_RS05120 (NSU13_05120) - 1017370..1017606 (-) 237 WP_008348804.1 IDEAL domain-containing protein -
  NSU13_RS05125 (NSU13_05125) comK 1017895..1018473 (+) 579 WP_041117040.1 competence protein ComK Regulator
  NSU13_RS05130 (NSU13_05130) - 1018775..1019257 (+) 483 WP_041117042.1 hypothetical protein -
  NSU13_RS05135 (NSU13_05135) - 1019289..1019441 (-) 153 Protein_953 PLP-dependent aminotransferase family protein -
  NSU13_RS05140 (NSU13_05140) - 1019550..1019825 (+) 276 WP_065214458.1 barstar family protein -
  NSU13_RS05145 (NSU13_05145) ceuB 1019986..1020936 (+) 951 WP_041117046.1 ABC transporter permease Machinery gene
  NSU13_RS05150 (NSU13_05150) - 1020929..1021879 (+) 951 WP_041117048.1 iron chelate uptake ABC transporter family permease subunit -
  NSU13_RS05155 (NSU13_05155) - 1021870..1022628 (+) 759 WP_252050319.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22292.33 Da        Isoelectric Point: 8.7962

>NTDB_id=983535 NSU13_RS05125 WP_041117040.1 1017895..1018473(+) (comK) [Bacillus sp. FSL M8-0049]
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHTFQESSLGDTVVTFTNEQAVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNKY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=983535 NSU13_RS05125 WP_041117040.1 1017895..1018473(+) (comK) [Bacillus sp. FSL M8-0049]
GTGTCAGGAATTAGTGAAACACCTTTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCAGTTGAAGAAGG
AAAAAGAGTATATTCAAAAGTTATAGAAAGAGAGACAAGCTTTTACGTTGAATTAAAGCCCCTGCAAATTATTGAACGCA
GCTGCAGATTCTTCGGCTCAAGCTATGCAGGCAGAAAGGCGGGAACATACGAAGTAACAGGAATTTCTCACAAACCCCCA
ATTGTGATTGACTCATCCAATCATCTGTATTTTTTCCCAACCTATTCATCCAACCGTCCTCAGTGCGGCTGGATCTCCCA
CAAATACATTCATACCTTCCAAGAATCATCCCTCGGAGACACGGTGGTCACCTTTACAAACGAACAAGCCGTCAAACTTG
ATGTCTCATATAAATCATTTGAGAGTCAGGTGCACCGGACAGCATATCTCCGAACGAAATTTCAAGATCGTCTCGATGGA
GGTCTTCCGAAGAAACAAGAATTTATGCTGTATCCAAAAGAACAGCAGCTCAATCTCGTATACGATTTTATATTAAGGGA
GCTTCGAAACAAATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

60.938

100

0.609

Multiple sequence alignment