Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   NSS80_RS12360 Genome accession   NZ_CP151985
Coordinates   2371462..2371797 (+) Length   111 a.a.
NCBI ID   WP_024422969.1    Uniprot ID   -
Organism   Bacillus sp. FSL M8-0350     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2366462..2376797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS80_RS12340 (NSS80_12340) gcvT 2366941..2368038 (-) 1098 WP_024427995.1 glycine cleavage system aminomethyltransferase GcvT -
  NSS80_RS12345 (NSS80_12345) - 2368600..2370270 (+) 1671 WP_317221939.1 SNF2-related protein -
  NSS80_RS12350 (NSS80_12350) - 2370285..2371082 (+) 798 WP_024427993.1 YqhG family protein -
  NSS80_RS12355 (NSS80_12355) - 2371264..2371428 (+) 165 WP_317221938.1 anti-repressor SinI family protein -
  NSS80_RS12360 (NSS80_12360) sinR 2371462..2371797 (+) 336 WP_024422969.1 transcriptional regulator SinR Regulator
  NSS80_RS12365 (NSS80_12365) - 2371865..2372665 (-) 801 WP_024422970.1 TasA family protein -
  NSS80_RS12370 (NSS80_12370) - 2372720..2373292 (-) 573 WP_024422971.1 signal peptidase I -
  NSS80_RS12375 (NSS80_12375) tapA 2373345..2373872 (-) 528 WP_234107214.1 amyloid fiber anchoring/assembly protein TapA -
  NSS80_RS12380 (NSS80_12380) - 2374172..2374450 (+) 279 WP_171464609.1 DUF3889 domain-containing protein -
  NSS80_RS12385 (NSS80_12385) - 2374485..2374679 (-) 195 WP_056767455.1 YqzE family protein -
  NSS80_RS12390 (NSS80_12390) comGG 2374739..2375122 (-) 384 WP_268415633.1 competence type IV pilus minor pilin ComGG -
  NSS80_RS12395 (NSS80_12395) comGF 2375119..2375571 (-) 453 WP_025092975.1 competence type IV pilus minor pilin ComGF -
  NSS80_RS12400 (NSS80_12400) comGE 2375558..2375872 (-) 315 WP_087978326.1 competence type IV pilus minor pilin ComGE -
  NSS80_RS12405 (NSS80_12405) comGD 2375856..2376302 (-) 447 WP_268437366.1 competence type IV pilus minor pilin ComGD -
  NSS80_RS12410 (NSS80_12410) comGC 2376295..2376588 (-) 294 WP_024422977.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12978.56 Da        Isoelectric Point: 5.0026

>NTDB_id=983497 NSS80_RS12360 WP_024422969.1 2371462..2371797(+) (sinR) [Bacillus sp. FSL M8-0350]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=983497 NSS80_RS12360 WP_024422969.1 2371462..2371797(+) (sinR) [Bacillus sp. FSL M8-0350]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946

Multiple sequence alignment