Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NSS80_RS08030 Genome accession   NZ_CP151985
Coordinates   1574008..1574910 (+) Length   300 a.a.
NCBI ID   WP_061109838.1    Uniprot ID   -
Organism   Bacillus sp. FSL M8-0350     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1569008..1579910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS80_RS08010 (NSS80_08010) - 1569671..1571410 (+) 1740 WP_317222047.1 glycosyltransferase -
  NSS80_RS08015 (NSS80_08015) - 1571407..1571682 (+) 276 WP_003211418.1 FlhB-like flagellar biosynthesis protein -
  NSS80_RS08020 (NSS80_08020) sucC 1571859..1573019 (+) 1161 WP_024426972.1 ADP-forming succinate--CoA ligase subunit beta -
  NSS80_RS08025 (NSS80_08025) sucD 1573042..1573944 (+) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  NSS80_RS08030 (NSS80_08030) dprA 1574008..1574910 (+) 903 WP_061109838.1 DNA-processing protein DprA Machinery gene
  NSS80_RS08035 (NSS80_08035) topA 1575104..1577179 (+) 2076 WP_041108973.1 type I DNA topoisomerase -
  NSS80_RS08040 (NSS80_08040) trmFO 1577250..1578554 (+) 1305 WP_024424183.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NSS80_RS08045 (NSS80_08045) xerC 1578617..1579534 (+) 918 WP_034281771.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34121.52 Da        Isoelectric Point: 8.8758

>NTDB_id=983489 NSS80_RS08030 WP_061109838.1 1574008..1574910(+) (dprA) [Bacillus sp. FSL M8-0350]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRALQTIDLTRLKQAEENEFPIFQHIVQAYLKQNIHM
IPITSPLYPSTLKNIYDPPPVLFLKGNVSYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVKEDWMIVSGLAKGIDGLAH
KECIRKKGKTIGIIAGGFQHLYPKEHEQMAQYMGEHHLLLSEHPPYVKPEKWHFPMRNRLISALTKGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDPNSTGPARLIQQGAKLVHSTKDILEEFSFRSVQYTEPT

Nucleotide


Download         Length: 903 bp        

>NTDB_id=983489 NSS80_RS08030 WP_061109838.1 1574008..1574910(+) (dprA) [Bacillus sp. FSL M8-0350]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCATTATTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTTAAACAGGATCGAGCATTACAAACGATCGACCTTACCC
GCTTAAAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAACATTCACATG
ATTCCCATCACATCACCCTTATATCCCAGCACACTAAAAAATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CGTATCATATTTAAATGAAGAAAAAAGTTTAGGTGTAGTCGGCACGCGAGTTCCATCGTCTTATGGAGAAGCATGTGTGA
AGAAAATTGTTGGTGAGCTTGTAAAGGAAGATTGGATGATTGTCAGTGGTTTAGCTAAAGGAATTGATGGACTTGCACAT
AAAGAGTGCATCAGGAAAAAAGGAAAAACGATCGGCATTATAGCAGGCGGTTTTCAGCATTTATACCCAAAAGAGCATGA
GCAAATGGCTCAATACATGGGCGAGCATCATTTGCTTTTGTCAGAGCACCCTCCTTATGTCAAACCAGAAAAGTGGCATT
TTCCAATGAGAAATCGTTTAATTAGTGCACTGACGAAAGGAACCATCGTGATACAGTGCAAAGAAAAGAGCGGTTCTCTT
ATTACAGCCTATCAAGCACTTGAGCAAGGAAAAGAGGTATTTGCGGTTGCTGGATCCATCTTTGATCCTAATTCCACAGG
TCCGGCAAGACTCATTCAGCAGGGAGCAAAGCTTGTTCATTCAACAAAAGATATTTTAGAGGAATTCTCCTTCCGCAGCG
TTCAATATACTGAACCAACATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

55.208

96

0.53
  dprA Legionella pneumophila strain ERS1305867

38.361

100

0.39
  dprA Lactococcus lactis subsp. cremoris KW2

38.754

96.333

0.373

Multiple sequence alignment