Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NSQ34_RS14490 Genome accession   NZ_CP151984
Coordinates   2803962..2804603 (-) Length   213 a.a.
NCBI ID   WP_034282566.1    Uniprot ID   -
Organism   Bacillus sp. FSL P2-0069     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2798962..2809603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ34_RS14455 (NSQ34_14455) - 2800087..2800518 (+) 432 WP_024423315.1 Na(+)/H(+) antiporter subunit B -
  NSQ34_RS14460 (NSQ34_14460) - 2800518..2800859 (+) 342 WP_048237322.1 Na(+)/H(+) antiporter subunit C -
  NSQ34_RS14465 (NSQ34_14465) - 2800852..2802330 (+) 1479 WP_176967248.1 Na+/H+ antiporter subunit D -
  NSQ34_RS14470 (NSQ34_14470) - 2802337..2802816 (+) 480 WP_024425941.1 Na+/H+ antiporter subunit E -
  NSQ34_RS14475 (NSQ34_14475) - 2802816..2803097 (+) 282 WP_024425942.1 Na(+)/H(+) antiporter subunit F1 -
  NSQ34_RS14480 (NSQ34_14480) mnhG 2803081..2803455 (+) 375 WP_024423320.1 monovalent cation/H(+) antiporter subunit G -
  NSQ34_RS14485 (NSQ34_14485) - 2803549..2803938 (-) 390 WP_024423321.1 hotdog fold thioesterase -
  NSQ34_RS14490 (NSQ34_14490) comA 2803962..2804603 (-) 642 WP_034282566.1 response regulator transcription factor Regulator
  NSQ34_RS14495 (NSQ34_14495) comP 2804684..2806996 (-) 2313 WP_034282568.1 ATP-binding protein Regulator
  NSQ34_RS14500 (NSQ34_14500) comX 2807050..2807220 (-) 171 WP_073207246.1 competence pheromone ComX -
  NSQ34_RS14505 (NSQ34_14505) - 2807217..2808131 (-) 915 WP_176967247.1 polyprenyl synthetase family protein -
  NSQ34_RS14510 (NSQ34_14510) degQ 2808283..2808423 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  NSQ34_RS14515 (NSQ34_14515) - 2808929..2809285 (+) 357 WP_041115816.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24163.56 Da        Isoelectric Point: 4.6397

>NTDB_id=983448 NSQ34_RS14490 WP_034282566.1 2803962..2804603(-) (comA) [Bacillus sp. FSL P2-0069]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNHQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=983448 NSQ34_RS14490 WP_034282566.1 2803962..2804603(-) (comA) [Bacillus sp. FSL P2-0069]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGACCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCTTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATTTTAA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAACAAATTTTAGAAACCAACCATCAAGTGAAAATTATC
ATTTATACAGGGTATGAAGTAGATGATTATTTTGAAGAGGCTATTCGGGCTGGATTACACGGTGCAATTAGTAAAACAGA
GACGAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGGGAAGTTGTCATTCAGCTGTCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGCAGACTGATCACGAGCTCTTAACCGAACGGGAGTGTTTGATT
CTTAGAGAAGTGGAAAAAGGATACACGAACCAGGAGATTGCCGATGTGCTTCATTTGAGCAAACGGTCAATTGAGTACAG
TTTGACATCCATCTTTAATAAACTGAATGTTGGATCTCGTACAGAAGCGGTGTTAATTGCCAAGTCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718

Multiple sequence alignment