Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NSQ34_RS07705 Genome accession   NZ_CP151984
Coordinates   1517804..1518706 (+) Length   300 a.a.
NCBI ID   WP_034281769.1    Uniprot ID   -
Organism   Bacillus sp. FSL P2-0069     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1512804..1523706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ34_RS07685 (NSQ34_07685) - 1513467..1515206 (+) 1740 WP_176967435.1 glycosyltransferase -
  NSQ34_RS07690 (NSQ34_07690) - 1515203..1515478 (+) 276 WP_003211418.1 FlhB-like flagellar biosynthesis protein -
  NSQ34_RS07695 (NSQ34_07695) sucC 1515655..1516815 (+) 1161 WP_024426972.1 ADP-forming succinate--CoA ligase subunit beta -
  NSQ34_RS07700 (NSQ34_07700) sucD 1516838..1517740 (+) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  NSQ34_RS07705 (NSQ34_07705) dprA 1517804..1518706 (+) 903 WP_034281769.1 DNA-processing protein DprA Machinery gene
  NSQ34_RS07710 (NSQ34_07710) topA 1518900..1520975 (+) 2076 WP_034281770.1 type I DNA topoisomerase -
  NSQ34_RS07715 (NSQ34_07715) trmFO 1521046..1522350 (+) 1305 WP_024424183.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NSQ34_RS07720 (NSQ34_07720) xerC 1522413..1523330 (+) 918 WP_034281771.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34155.53 Da        Isoelectric Point: 8.8758

>NTDB_id=983428 NSQ34_RS07705 WP_034281769.1 1517804..1518706(+) (dprA) [Bacillus sp. FSL P2-0069]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRALQTIDFTRLKQAEENEFPIFQHIVQAYLKQNIHM
IPITSPLYPSTLKNIYDPPPVLFLKGNVSYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVKEDWMIVSGLAKGIDGLAH
KECIRKKGKTIGIIAGGFQHLYPKEHEQMAQYMGEHHLLLSEHPPYVKPEKWHFPMRNRLISALTKGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDPNSTGPARLIQQGAKLVHSTKDILEEFSFRSVQYTEPT

Nucleotide


Download         Length: 903 bp        

>NTDB_id=983428 NSQ34_RS07705 WP_034281769.1 1517804..1518706(+) (dprA) [Bacillus sp. FSL P2-0069]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCATTATTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTTAAACAGGATCGAGCGTTACAAACGATCGACTTTACCC
GCTTAAAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAACATTCACATG
ATTCCCATCACATCACCCTTATATCCCAGCACACTAAAAAATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CGTATCATATTTAAATGAAGAAAAAAGTTTAGGTGTAGTCGGCACGCGAGTTCCATCGTCTTATGGAGAAGCATGTGTGA
AGAAAATTGTTGGTGAGCTTGTAAAGGAAGATTGGATGATTGTCAGTGGTTTAGCTAAAGGAATCGATGGACTGGCACAT
AAAGAGTGCATCAGAAAAAAAGGAAAAACGATCGGCATTATAGCAGGCGGTTTTCAGCATTTATACCCAAAAGAGCATGA
GCAAATGGCTCAATACATGGGCGAGCATCATTTGCTTTTGTCAGAGCATCCTCCTTATGTCAAACCAGAAAAGTGGCATT
TTCCAATGAGAAATCGTTTAATTAGTGCACTGACGAAAGGAACCATCGTGATACAGTGCAAAGAAAAGAGCGGTTCTCTT
ATTACAGCCTATCAAGCACTTGAGCAAGGAAAAGAGGTATTTGCAGTTGCTGGATCCATCTTTGATCCTAATTCCACAGG
TCCGGCAAGACTCATTCAGCAGGGAGCAAAGCTTGTTCATTCAACAAAAGATATTTTAGAGGAATTCTCCTTCCGCAGCG
TTCAATATACTGAACCAACATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

55.208

96

0.53
  dprA Legionella pneumophila strain ERS1305867

38.033

100

0.387

Multiple sequence alignment