Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NST65_RS16420 Genome accession   NZ_CP151983
Coordinates   3174365..3175765 (-) Length   466 a.a.
NCBI ID   WP_309300290.1    Uniprot ID   -
Organism   Bacillus sp. FSL P4-0248     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3169365..3180765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST65_RS16385 (NST65_16385) flgL 3169566..3170474 (-) 909 WP_081124903.1 flagellar hook-associated protein FlgL -
  NST65_RS16390 (NST65_16390) flgK 3170484..3172004 (-) 1521 WP_024423618.1 flagellar hook-associated protein FlgK -
  NST65_RS16395 (NST65_16395) - 3172020..3172502 (-) 483 WP_024423619.1 flagellar protein FlgN -
  NST65_RS16400 (NST65_16400) flgM 3172521..3172784 (-) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  NST65_RS16405 (NST65_16405) - 3172864..3173283 (-) 420 WP_034281098.1 TIGR03826 family flagellar region protein -
  NST65_RS16410 (NST65_16410) comFC 3173340..3173996 (-) 657 WP_258521759.1 ComF family protein Machinery gene
  NST65_RS16415 (NST65_16415) - 3174023..3174316 (-) 294 WP_024423623.1 competence protein ComFB -
  NST65_RS16420 (NST65_16420) comFA 3174365..3175765 (-) 1401 WP_309300290.1 DEAD/DEAH box helicase Machinery gene
  NST65_RS16425 (NST65_16425) - 3175883..3176725 (-) 843 WP_024423625.1 DegV family protein -
  NST65_RS16430 (NST65_16430) degU 3176941..3177630 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  NST65_RS16435 (NST65_16435) degS 3177695..3178870 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  NST65_RS16440 (NST65_16440) - 3179091..3179747 (+) 657 WP_111926810.1 YigZ family protein -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 53054.05 Da        Isoelectric Point: 9.9510

>NTDB_id=983393 NST65_RS16420 WP_309300290.1 3174365..3175765(-) (comFA) [Bacillus sp. FSL P4-0248]
MLNMDKAMELMGQLHSRHLLTVETKCPQSNLDWLEEKGLVNRSPAIERKANGFTCCRCGVSHKRYFAHSPCEVCQKDCVY
CRSCIMMGKAAECGFLYEWTGPQMVETGRAELTWQGELSKGQKRASERMIEAIKNKFDLLVWAVCGAGKTEVLFHGIEYA
LNQGMSVCIATPRTDVVLELEPRLRKAFQGVIITVLYGGSSQRFQIAPLVITTTHQLMRYKNAFDVLIVDEVDAFPYSMD
ERLQFAVLKAMRKNGGVRIYLSATPSKKMTREVSRGKLEAIKIPLRFHKHPLPVPTFHWIGHWKKKLKKNQLPPKVMNWM
QRHIANKRRILLFVPSIAVMKKVTKILREQSLNVEGVSADDPDRKQKVQHFRDYVYDVLVTTTILERGVTIPNVQVGVLG
SESTIFTESALVQISGRVGRHPDYCTGDVFLFHFGLTRSMKQAKKHIVKMNDTAAKEFSEKQCGFN

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=983393 NST65_RS16420 WP_309300290.1 3174365..3175765(-) (comFA) [Bacillus sp. FSL P4-0248]
ATGTTGAATATGGACAAAGCAATGGAACTAATGGGGCAGCTGCATTCACGCCATCTGCTCACCGTTGAAACAAAGTGCCC
ACAGTCCAATTTAGATTGGCTGGAGGAGAAGGGCTTAGTCAATCGGTCTCCAGCCATTGAGAGGAAAGCAAATGGTTTTA
CATGCTGCCGGTGCGGTGTATCACACAAGCGGTATTTCGCTCATTCTCCATGTGAAGTGTGTCAAAAGGATTGTGTGTAC
TGTAGATCATGCATCATGATGGGAAAAGCAGCAGAATGTGGGTTTCTTTATGAATGGACAGGTCCACAAATGGTAGAAAC
AGGTCGAGCCGAATTAACATGGCAGGGAGAGCTGTCTAAAGGACAAAAAAGAGCGTCAGAAAGAATGATTGAAGCTATTA
AAAACAAATTTGATCTACTTGTTTGGGCGGTTTGCGGAGCAGGGAAAACGGAAGTGCTTTTTCATGGAATCGAATATGCA
TTAAATCAAGGAATGAGTGTCTGTATTGCGACTCCTAGAACAGATGTTGTGCTTGAACTCGAACCGCGGCTTAGAAAAGC
ATTTCAAGGGGTGATAATTACCGTACTTTATGGAGGCAGTTCTCAAAGGTTTCAAATAGCACCGCTTGTGATCACCACAA
CCCACCAGCTGATGAGATACAAAAATGCTTTTGATGTGCTTATTGTAGATGAAGTCGATGCCTTCCCTTATTCAATGGAT
GAGCGACTCCAATTTGCTGTTCTAAAGGCGATGAGAAAGAACGGAGGGGTTAGGATTTATTTAAGTGCGACACCCTCTAA
AAAAATGACGAGAGAGGTTTCTCGCGGAAAACTGGAAGCGATAAAAATTCCTTTGCGTTTTCACAAGCACCCATTACCCG
TACCGACCTTTCATTGGATCGGACATTGGAAAAAGAAATTAAAAAAGAACCAGCTGCCCCCTAAAGTGATGAATTGGATG
CAGAGACATATTGCAAATAAGAGAAGAATATTACTTTTTGTTCCTTCAATTGCTGTCATGAAGAAGGTAACGAAGATTCT
ACGAGAACAATCCTTAAACGTGGAGGGAGTATCTGCCGATGATCCGGATAGGAAACAAAAGGTTCAGCACTTTAGAGATT
ACGTATACGATGTACTAGTTACAACCACTATTCTAGAAAGAGGCGTAACCATTCCAAATGTTCAAGTGGGGGTACTAGGT
TCGGAATCTACTATTTTTACAGAGAGTGCACTTGTTCAGATTTCTGGACGGGTAGGCAGACATCCGGATTATTGTACAGG
AGATGTTTTCCTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAGCATATCGTAAAAATGAATGATACGG
CTGCAAAAGAGTTTTCTGAAAAACAGTGTGGGTTCAACTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(117-266)

Helicase conserved C-terminal domain (Helicase_C)

(325-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.193

97.854

0.511

Multiple sequence alignment