Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACN2WE_RS28990 Genome accession   NZ_CP183921
Coordinates   6201436..6203055 (+) Length   539 a.a.
NCBI ID   WP_420035760.1    Uniprot ID   -
Organism   Streptomyces sp. cg28     
Function   promote branch migration; interact with DprA; integration of tDNA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6196436..6208055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN2WE_RS28955 (ACN2WE_28955) lepB 6196538..6197269 (+) 732 WP_420035754.1 signal peptidase I -
  ACN2WE_RS28960 (ACN2WE_28960) lepB 6197262..6198374 (+) 1113 WP_420035755.1 signal peptidase I -
  ACN2WE_RS28965 (ACN2WE_28965) lepB 6198379..6199227 (+) 849 WP_420035756.1 signal peptidase I -
  ACN2WE_RS28970 (ACN2WE_28970) lepB 6199320..6200060 (+) 741 WP_420035757.1 signal peptidase I -
  ACN2WE_RS28975 (ACN2WE_28975) - 6200053..6200571 (+) 519 WP_420035758.1 NUDIX hydrolase -
  ACN2WE_RS28980 (ACN2WE_28980) - 6200627..6200935 (+) 309 WP_005311352.1 DUF2469 domain-containing protein -
  ACN2WE_RS28985 (ACN2WE_28985) - 6201053..6201436 (+) 384 WP_420035759.1 YraN family protein -
  ACN2WE_RS28990 (ACN2WE_28990) comM 6201436..6203055 (+) 1620 WP_420035760.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACN2WE_RS28995 (ACN2WE_28995) dprA 6203052..6204230 (+) 1179 WP_420035761.1 DNA-processing protein DprA -
  ACN2WE_RS29000 (ACN2WE_29000) whiG 6204624..6205463 (+) 840 WP_111668215.1 RNA polymerase sigma factor WhiG -
  ACN2WE_RS29005 (ACN2WE_29005) - 6205620..6206177 (+) 558 WP_420037999.1 TetR/AcrR family transcriptional regulator -
  ACN2WE_RS29010 (ACN2WE_29010) - 6206835..6207323 (-) 489 Protein_5717 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 539 a.a.        Molecular weight: 55901.11 Da        Isoelectric Point: 6.0263

>NTDB_id=983388 ACN2WE_RS28990 WP_420035760.1 6201436..6203055(+) (comM) [Streptomyces sp. cg28]
MGFARTCSVALVGVEGVVVEVQADLEPGVAAFTLVGLPDKSLVESRDRVRAAVVNSGADWPQKKLTVGLSPASVPKSGSG
FDLAVACAVLGAAERIDPRVLADIVMIGELGLDGRVRPVRGVLPAVLAAADAGYEQVVVPESTAGEAALVPGISVLGVRS
LRQLIAVLADEPVPDEEPETHGRPDPMLAGLSMPGSRAGTGIGGLPHDGPGLDLADVVGQLSARTAIEVAAAGGHHVMLS
GPPGAGKTMLAERLPAILPRLTREESLEVTAIHSVAGMLPPGTSMIDVAPYCAPHHSATMQSLVGGGPGTARPGAVSLSH
RGVLFLDEAPEFSGQALDALRQPLEAGLVVIARSAGVVRLPARFLMALAANPCPCGQFRVHGGECDCPPATVRRYQARLS
GPLLDRVDLRVEVDPVTRNELAGYGPRGDSTQVVADRVRQARERAAARFAESPWRTNCEVPGHALRTRWPAAPGALDEAE
LDLERGFLTARGLDRVLRVAWTVADLGGRDRPCAQDVALALQLRTGISRGAPMTIGSGT

Nucleotide


Download         Length: 1620 bp        

>NTDB_id=983388 ACN2WE_RS28990 WP_420035760.1 6201436..6203055(+) (comM) [Streptomyces sp. cg28]
ATGGGATTCGCGCGTACGTGTTCCGTGGCCCTGGTGGGTGTCGAGGGCGTCGTCGTCGAGGTGCAGGCCGACCTGGAGCC
GGGCGTCGCCGCCTTCACGCTGGTGGGGCTGCCCGACAAGAGCCTCGTGGAGAGCCGGGACCGGGTCAGGGCCGCCGTGG
TCAACTCCGGGGCGGACTGGCCGCAGAAGAAGCTCACCGTGGGGCTCAGCCCGGCGTCCGTGCCCAAGAGTGGATCCGGG
TTCGATCTGGCCGTCGCCTGCGCGGTCCTCGGCGCGGCCGAGCGGATCGACCCGCGGGTCCTCGCCGACATCGTGATGAT
CGGGGAGCTGGGGCTCGACGGGCGGGTGCGGCCGGTGCGCGGGGTGCTCCCGGCCGTGCTCGCCGCGGCCGACGCGGGCT
ACGAGCAGGTGGTGGTCCCGGAGTCCACGGCGGGCGAGGCCGCGCTCGTACCGGGCATCTCCGTCCTCGGCGTGCGCAGC
CTGCGCCAGCTCATCGCGGTCCTCGCGGACGAGCCGGTGCCGGACGAGGAGCCGGAGACGCACGGGCGCCCCGATCCCAT
GCTGGCCGGACTGAGCATGCCCGGCAGCAGGGCGGGCACCGGGATCGGCGGCCTGCCGCACGACGGGCCGGGTCTCGATC
TCGCCGATGTCGTCGGGCAGCTGTCGGCCCGCACCGCGATCGAGGTCGCGGCCGCGGGGGGCCACCACGTGATGCTGTCC
GGGCCGCCGGGCGCGGGCAAGACCATGCTCGCCGAGCGACTGCCCGCGATCCTCCCCCGGCTCACCCGCGAGGAGTCCCT
GGAGGTCACCGCGATCCACTCGGTGGCGGGCATGCTGCCACCGGGCACGTCTATGATCGACGTCGCGCCGTACTGCGCGC
CGCACCACTCGGCGACCATGCAGTCCCTCGTCGGCGGCGGCCCGGGGACGGCACGGCCGGGGGCCGTCTCGTTGTCGCAC
CGCGGTGTGCTTTTTCTGGACGAGGCGCCGGAGTTCAGCGGACAGGCGCTCGACGCCCTGCGGCAGCCGCTGGAGGCGGG
CCTTGTCGTCATCGCCCGCAGCGCGGGAGTGGTGCGGTTGCCCGCCCGGTTCCTGATGGCCCTCGCCGCGAACCCTTGTC
CTTGTGGGCAGTTCCGGGTCCACGGCGGCGAGTGCGACTGCCCGCCGGCCACGGTCCGGCGGTATCAGGCCCGGCTCTCC
GGACCGCTGCTCGACCGGGTCGACCTGCGCGTCGAGGTGGACCCCGTCACGCGCAACGAACTGGCCGGGTACGGCCCGCG
CGGCGACTCCACCCAGGTCGTCGCCGACCGGGTGCGCCAGGCGAGGGAGCGGGCGGCGGCCCGGTTCGCGGAGTCGCCGT
GGCGGACCAACTGCGAAGTCCCGGGGCACGCGCTGCGCACCCGGTGGCCGGCCGCCCCGGGCGCCCTGGACGAGGCCGAA
CTGGACCTGGAGCGCGGCTTCCTGACCGCACGCGGGCTCGACCGGGTGCTGCGGGTGGCCTGGACCGTGGCCGACCTCGG
CGGACGCGATCGGCCCTGCGCACAGGACGTGGCGCTCGCACTGCAACTGCGGACCGGCATCTCGCGCGGGGCACCCATGA
CGATCGGGTCCGGCACATGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(213-420)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(429-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae O1 biovar El Tor strain E7946

39.504

97.217

0.384
  comM Vibrio cholerae strain A1552

39.504

97.217

0.384
  comM Acinetobacter baylyi ADP1

39.335

94.805

0.373
  comM Vibrio campbellii strain DS40M4

38.447

95.547

0.367

Multiple sequence alignment