Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | NSQ25_RS11320 | Genome accession | NZ_CP151982 |
| Coordinates | 2215907..2216242 (+) | Length | 111 a.a. |
| NCBI ID | WP_024422969.1 | Uniprot ID | - |
| Organism | Bacillus sp. FSL R5-0512 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2210907..2221242
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NSQ25_RS11300 (NSQ25_11300) | gcvT | 2211384..2212481 (-) | 1098 | WP_046311744.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| NSQ25_RS11305 (NSQ25_11305) | - | 2213043..2214713 (+) | 1671 | WP_326136242.1 | SNF2-related protein | - |
| NSQ25_RS11310 (NSQ25_11310) | - | 2214728..2215525 (+) | 798 | WP_326136241.1 | YqhG family protein | - |
| NSQ25_RS11315 (NSQ25_11315) | - | 2215709..2215873 (+) | 165 | WP_075623492.1 | anti-repressor SinI family protein | - |
| NSQ25_RS11320 (NSQ25_11320) | sinR | 2215907..2216242 (+) | 336 | WP_024422969.1 | transcriptional regulator SinR | Regulator |
| NSQ25_RS11325 (NSQ25_11325) | - | 2216310..2217110 (-) | 801 | WP_034280222.1 | TasA family protein | - |
| NSQ25_RS11330 (NSQ25_11330) | - | 2217168..2217740 (-) | 573 | WP_034280218.1 | signal peptidase I | - |
| NSQ25_RS11335 (NSQ25_11335) | tapA | 2217793..2218320 (-) | 528 | WP_144496218.1 | amyloid fiber anchoring/assembly protein TapA | - |
| NSQ25_RS11340 (NSQ25_11340) | - | 2218621..2218899 (+) | 279 | WP_061109527.1 | DUF3889 domain-containing protein | - |
| NSQ25_RS11345 (NSQ25_11345) | - | 2218934..2219128 (-) | 195 | WP_024422974.1 | YqzE family protein | - |
| NSQ25_RS11350 (NSQ25_11350) | comGG | 2219188..2219571 (-) | 384 | WP_326136240.1 | competence type IV pilus minor pilin ComGG | - |
| NSQ25_RS11355 (NSQ25_11355) | comGF | 2219568..2220095 (-) | 528 | WP_260983449.1 | competence type IV pilus minor pilin ComGF | - |
| NSQ25_RS11360 (NSQ25_11360) | comGE | 2220007..2220321 (-) | 315 | WP_034621606.1 | competence type IV pilus minor pilin ComGE | - |
| NSQ25_RS11365 (NSQ25_11365) | comGD | 2220305..2220751 (-) | 447 | WP_070326501.1 | competence type IV pilus minor pilin ComGD | - |
| NSQ25_RS11370 (NSQ25_11370) | comGC | 2220744..2221037 (-) | 294 | WP_024422977.1 | competence type IV pilus major pilin ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12978.56 Da Isoelectric Point: 5.0026
>NTDB_id=983313 NSQ25_RS11320 WP_024422969.1 2215907..2216242(+) (sinR) [Bacillus sp. FSL R5-0512]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE
Nucleotide
Download Length: 336 bp
>NTDB_id=983313 NSQ25_RS11320 WP_024422969.1 2215907..2216242(+) (sinR) [Bacillus sp. FSL R5-0512]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
94.595 |
100 |
0.946 |