Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NSQ25_RS11135 Genome accession   NZ_CP151982
Coordinates   2183737..2185470 (-) Length   577 a.a.
NCBI ID   WP_034280267.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0512     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2178737..2190470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ25_RS11115 (NSQ25_11115) - 2179614..2180714 (-) 1101 WP_024422933.1 Rap family tetratricopeptide repeat protein -
  NSQ25_RS11120 (NSQ25_11120) - 2180702..2180899 (-) 198 WP_024422934.1 hypothetical protein -
  NSQ25_RS11125 (NSQ25_11125) spo0A 2181171..2181974 (-) 804 WP_024422935.1 sporulation transcription factor Spo0A Regulator
  NSQ25_RS11130 (NSQ25_11130) spoIVB 2182260..2183537 (-) 1278 WP_034280268.1 SpoIVB peptidase -
  NSQ25_RS11135 (NSQ25_11135) recN 2183737..2185470 (-) 1734 WP_034280267.1 DNA repair protein RecN Machinery gene
  NSQ25_RS11140 (NSQ25_11140) argR 2185504..2185953 (-) 450 WP_024422938.1 transcriptional regulator ArgR -
  NSQ25_RS11145 (NSQ25_11145) - 2186117..2186971 (-) 855 WP_034280266.1 TlyA family RNA methyltransferase -
  NSQ25_RS11150 (NSQ25_11150) dxs 2186968..2188869 (-) 1902 WP_034280265.1 1-deoxy-D-xylulose-5-phosphate synthase -
  NSQ25_RS11155 (NSQ25_11155) - 2189020..2189910 (-) 891 WP_065214642.1 polyprenyl synthetase family protein -
  NSQ25_RS11160 (NSQ25_11160) - 2189900..2190160 (-) 261 WP_003215880.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64725.54 Da        Isoelectric Point: 4.7748

>NTDB_id=983312 NSQ25_RS11135 WP_034280267.1 2183737..2185470(-) (recN) [Bacillus sp. FSL R5-0512]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPADHPVFALC
EEQGIDASDEMMILRRDINNSGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPALL
QYQEAYDQYMKTAQKLRQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDERLQEERHQISNYEKIYSSLQNAYNALRNE
QGGLDWVGMSSSELEQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTTV
EEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAMSRDALLEALNVSELRKKWAKKLAKQIQTELKDLYMEKSSFDTAFSV
RYAPFGSTDCPLLDGKPVQLGKNGIDQAQFVISTNTGEPMKSLSKVASGGEISRVMLAVKSIFSAKQDVTSIIFDEVDTG
VSGRVAQAIAEKIYKVASGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTSVKPLSHEEKVSEIGRMIAGVEVTELTK
QHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=983312 NSQ25_RS11135 WP_034280267.1 2183737..2185470(-) (recN) [Bacillus sp. FSL R5-0512]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACGGTTTCATTTGAAAAAGGACTAACGGTTCT
AACGGGGGAAACAGGTGCCGGAAAATCCATCATGATTGACGCTGTCTCACTTCTCGTGGGAGGAAGAGGTTCCTCTGAAT
TTGTCCGCTACGGTGAAAAAAAAGCAGAGCTGGAAGGGCTTTTTCTTGTACCAGCCGATCATCCTGTATTTGCTCTATGC
GAAGAGCAGGGAATTGACGCATCAGATGAAATGATGATCCTCCGCCGTGATATTAACAACAGCGGGAAAAGCATTTGCCG
GATTAATGGAAAGCTTGTCACCATCTCACTTTTACGGGAAGTAGGACGGCTTTTGCTTGATATACATGGACAGCACGATA
ACCAACTGCTCATGGAAGATGAAAATCATCTGCATTTGCTCGATCAATTTGGAGCAGAAGAAATTGCACCGGCTCTCTTG
CAGTATCAAGAAGCATATGATCAATATATGAAGACGGCTCAAAAGCTCAGGCAGCTGTCTGAGAATGAGCAGGAAATGGT
GCACCGCTTAGATTTACTGCAATTTCAGCTAGAGGAGATTGAGGCGGCACAATTAGAGCCGGGGGAAGATGAGAGGCTTC
AGGAAGAGCGACATCAAATCAGCAACTACGAAAAAATCTATTCTTCACTCCAAAACGCGTACAACGCTTTGCGTAATGAG
CAAGGAGGACTAGATTGGGTTGGTATGTCCTCAAGCGAGCTTGAGCAAGTGTCTGAAATCAACGATGATTTGAAAAAGTT
ATCTGAACAAGTGTCGAACTCCTACTACTTATTAGAGGATTCAACTTTCCAAATGCGAAGCATGCTGGATCAATTAGAAT
TTGATCCGGCTCGTCTTGATTTTATTGAGTCCAGGCTGAATGAAATGAAGCAGTTAAAACGAAAATACGGCACAACCGTT
GAGGAAATTTTGGAGTATGCGGCGAAGATTGAAGAAGAAATAGATCAAATCCAAAATCGAGACAGCCATCTGCAGACGCT
CAAAAATAAATTAGATGCGATGAGCCGTGATGCTCTGCTGGAAGCACTTAACGTTTCGGAGCTGCGTAAAAAATGGGCCA
AAAAGCTAGCAAAGCAAATTCAAACAGAGCTCAAGGATTTGTATATGGAGAAGTCATCATTTGACACAGCTTTTTCTGTT
CGATATGCGCCATTTGGCAGCACTGATTGTCCGCTATTAGACGGAAAACCTGTCCAGCTCGGGAAAAATGGAATCGACCA
AGCACAATTTGTCATTTCTACAAATACAGGCGAACCGATGAAATCTTTATCGAAAGTAGCCTCAGGTGGAGAAATTTCAC
GTGTCATGCTCGCTGTGAAGAGTATTTTCTCAGCTAAACAAGACGTCACATCCATTATTTTCGATGAAGTTGATACAGGT
GTCAGCGGCAGAGTGGCACAAGCCATTGCTGAGAAAATTTACAAAGTTGCGTCTGGATCACAAGTGCTCTGTATTACACA
CCTGCCTCAAGTAGCCGCAATGGCTGACACGCATCTCTTCATTTCTAAACGCTCGAAAGCGGGCAGAACACTGACGAGTG
TCAAACCATTAAGTCATGAAGAAAAAGTGAGTGAAATTGGCCGGATGATTGCCGGTGTGGAAGTGACTGAGCTGACAAAA
CAACACGCAAAAGAACTATTGCACCAAGCAAATGATGTCAAAACAACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

75.91

100

0.759

Multiple sequence alignment