Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NSQ25_RS07750 Genome accession   NZ_CP151982
Coordinates   1521872..1522774 (+) Length   300 a.a.
NCBI ID   WP_326136450.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0512     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1516872..1527774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ25_RS07730 (NSQ25_07730) - 1517535..1519274 (+) 1740 WP_046310920.1 hypothetical protein -
  NSQ25_RS07735 (NSQ25_07735) - 1519271..1519546 (+) 276 WP_003211418.1 FlhB-like flagellar biosynthesis protein -
  NSQ25_RS07740 (NSQ25_07740) sucC 1519723..1520883 (+) 1161 WP_024426972.1 ADP-forming succinate--CoA ligase subunit beta -
  NSQ25_RS07745 (NSQ25_07745) sucD 1520906..1521808 (+) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  NSQ25_RS07750 (NSQ25_07750) dprA 1521872..1522774 (+) 903 WP_326136450.1 DNA-processing protein DprA Machinery gene
  NSQ25_RS07755 (NSQ25_07755) topA 1522968..1525043 (+) 2076 WP_061109839.1 type I DNA topoisomerase -
  NSQ25_RS07760 (NSQ25_07760) trmFO 1525114..1526418 (+) 1305 WP_024424183.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NSQ25_RS07765 (NSQ25_07765) xerC 1526481..1527398 (+) 918 WP_034281771.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34135.54 Da        Isoelectric Point: 8.8758

>NTDB_id=983305 NSQ25_RS07750 WP_326136450.1 1521872..1522774(+) (dprA) [Bacillus sp. FSL R5-0512]
MYNLSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRALQTIDLTRLKQAEENEFPIFQHIVQAYLKQNIHM
IPITSPLYPSTLKNIYDPPPVLFLKGNVSYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVKEDWMIVSGLAKGIDGLAH
KECIRKKGKTIGIIAGGFQHLYPKEHEQMAQYMGEHHLLLSEHPPYVKPEKWHFPMRNRLISALTKGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDPNSTGPARLIQQGAKLVHSTKDILEEFSFRSVQYTEPT

Nucleotide


Download         Length: 903 bp        

>NTDB_id=983305 NSQ25_RS07750 WP_326136450.1 1521872..1522774(+) (dprA) [Bacillus sp. FSL R5-0512]
ATGTACAACTTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCATTATTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTTAAACAGGATCGAGCATTACAAACGATCGACCTTACCC
GCTTAAAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAACATTCACATG
ATTCCCATCACATCACCCTTATATCCCAGCACACTAAAAAATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CGTATCATATTTAAATGAAGAAAAAAGTTTAGGTGTAGTCGGCACGCGAGTTCCATCGTCTTATGGAGAAGCATGTGTGA
AGAAAATTGTTGGTGAGCTTGTAAAGGAAGATTGGATGATTGTCAGTGGTTTAGCTAAAGGAATTGATGGACTTGCACAT
AAAGAGTGCATCAGGAAAAAAGGAAAAACGATCGGCATTATAGCAGGCGGTTTTCAGCATTTATACCCAAAAGAGCATGA
GCAAATGGCTCAATACATGGGCGAGCATCATTTGCTTTTGTCAGAGCACCCTCCTTATGTCAAACCAGAAAAGTGGCATT
TTCCAATGAGAAATCGTTTAATTAGTGCACTGACGAAAGGAACCATCGTGATACAGTGCAAAGAAAAGAGCGGTTCTCTT
ATTACAGCCTATCAAGCACTTGAGCAAGGAAAAGAGGTATTTGCGGTTGCTGGATCCATCTTTGATCCTAATTCCACAGG
TCCGGCAAGACTCATTCAGCAGGGAGCAAAGCTTGTTCATTCAACAAAAGATATTTTAGAGGAATTCTCCTTCCGCAGCG
TTCAATATACTGAACCAACATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

55.208

96

0.53
  dprA Legionella pneumophila strain ERS1305867

38.689

100

0.393
  dprA Lactococcus lactis subsp. cremoris KW2

38.754

96.333

0.373

Multiple sequence alignment