Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   NSQ25_RS06480 Genome accession   NZ_CP151982
Coordinates   1275913..1278015 (-) Length   700 a.a.
NCBI ID   WP_326136507.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0512     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1270913..1283015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ25_RS06455 (NSQ25_06455) - 1271330..1271572 (+) 243 WP_024424676.1 aspartyl-phosphate phosphatase Spo0E family protein -
  NSQ25_RS06460 (NSQ25_06460) - 1271619..1273124 (-) 1506 WP_034281538.1 ATP-binding protein -
  NSQ25_RS06465 (NSQ25_06465) - 1273329..1273784 (+) 456 WP_034281539.1 MarR family transcriptional regulator -
  NSQ25_RS06470 (NSQ25_06470) motB 1273978..1274748 (-) 771 WP_326136509.1 flagellar motor protein MotB -
  NSQ25_RS06475 (NSQ25_06475) motA 1274741..1275535 (-) 795 WP_024424680.1 flagellar motor stator protein MotA -
  NSQ25_RS06480 (NSQ25_06480) clpC 1275913..1278015 (-) 2103 WP_326136507.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  NSQ25_RS06485 (NSQ25_06485) - 1278260..1279303 (+) 1044 WP_326136506.1 hypothetical protein -
  NSQ25_RS06490 (NSQ25_06490) queC 1279579..1280235 (+) 657 WP_024424683.1 7-cyano-7-deazaguanine synthase QueC -
  NSQ25_RS06495 (NSQ25_06495) queD 1280236..1280676 (+) 441 WP_034281544.1 6-carboxytetrahydropterin synthase QueD -
  NSQ25_RS06500 (NSQ25_06500) queE 1280669..1281400 (+) 732 WP_034281545.1 7-carboxy-7-deazaguanine synthase QueE -
  NSQ25_RS06505 (NSQ25_06505) queF 1281416..1281913 (+) 498 WP_024426839.1 preQ(1) synthase -
  NSQ25_RS06510 (NSQ25_06510) - 1282375..1282743 (-) 369 WP_326136505.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 700 a.a.        Molecular weight: 77875.48 Da        Isoelectric Point: 5.0736

>NTDB_id=983301 NSQ25_RS06480 WP_326136507.1 1275913..1278015(-) (clpC) [Bacillus sp. FSL R5-0512]
MRCQHCQVNEATIRLNMQVNSSRSQMVLCEDCYTSLMEQSKMKMGPQLFGGSSFFSQAASHAPNMEQPKQKGLLDELGRN
LTDGANAGLIDPVIGRDEEVARVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIASGDVPNKLKNKQIYLLDVSSLVA
NTGVRGQFEERMKQLIKELQSRKNIILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDAAL
ERRFQPVIVDEPTQDEAIDILKGIQDKYEAYHGVTYSDEAIKACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSIDAAS
EDELTNRLAQIAAEKQAALKEEQYEKAAKLRDEEEAIEARLQNKTTEKEHIVTAEDIQAIVEQKTGIPVGKLQADEQTKM
KEIDVRLKARVIGQEHAVDKVAKAVKRSRAGLKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSRDAIIRLDMSEYME
KHSVSKLIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSN
AGSADKTVKVGFQSDQGEAIEEQSLIDSLSSYFKPEFLNRFDSIIQFESLDRDDLVKIVDLLLNELSEQLKEQNLTVHVT
NEAKEKIAELGYHPAFGARPLRRTIQEHVEDQMTEILLEEEQLSGFTVDVEHDEIVVKKG

Nucleotide


Download         Length: 2103 bp        

>NTDB_id=983301 NSQ25_RS06480 WP_326136507.1 1275913..1278015(-) (clpC) [Bacillus sp. FSL R5-0512]
ATGCGTTGTCAACATTGTCAAGTAAATGAAGCAACTATTCGCCTGAATATGCAAGTAAATTCGTCCCGGAGCCAAATGGT
TTTATGTGAAGACTGCTATACCTCTTTGATGGAGCAGTCAAAAATGAAAATGGGACCTCAGCTTTTTGGAGGAAGTTCAT
TCTTCTCTCAGGCAGCAAGTCATGCCCCAAACATGGAGCAGCCAAAGCAAAAAGGCTTACTCGATGAGCTTGGCCGTAAC
TTAACAGATGGAGCAAATGCTGGTTTAATTGATCCAGTCATTGGCCGAGATGAAGAAGTCGCAAGAGTCATTGAGATTTT
AAATAGAAGAAATAAAAATAACCCTGTTCTTATTGGTGAACCAGGTGTTGGGAAAACAGCGATCGCAGAAGGACTCGCGC
TCAAAATTGCGAGCGGCGATGTGCCAAATAAATTAAAGAACAAACAAATCTATTTATTAGATGTCTCCTCACTTGTCGCA
AACACAGGTGTACGCGGTCAATTTGAGGAAAGAATGAAGCAGTTAATCAAAGAACTGCAAAGCCGTAAAAATATCATCTT
ATTTGTAGATGAAATCCACCTTCTTGTGGGCGCAGGATCTGCAGAAGGATCAATGGATGCTGGAAACATTTTAAAACCAG
CCCTTGCAAGAGGCGAGCTGCAGCTAGTAGGTGCGACGACATTAAAAGAATATCGCCAAATTGAAAAAGATGCTGCACTC
GAACGGCGCTTCCAGCCCGTTATCGTAGATGAGCCAACACAAGATGAAGCAATCGACATCTTAAAAGGCATTCAAGATAA
ATACGAGGCCTATCATGGTGTCACCTATTCAGATGAAGCAATCAAAGCGTGCGTTCAATTATCTTCGCGGTATATTCAAG
ACCGTCATTTGCCGGATAAAGCCATTGATTTAATGGATGAAGCTGGTTCAAAAGCGAACCTCTCCATTGATGCAGCAAGT
GAAGATGAGCTGACAAACCGACTAGCGCAAATTGCCGCAGAAAAACAAGCTGCGCTAAAAGAAGAACAATATGAAAAAGC
AGCGAAGCTACGCGATGAAGAAGAAGCCATTGAAGCAAGACTTCAAAACAAAACAACTGAAAAAGAGCATATCGTTACAG
CAGAGGACATTCAGGCCATTGTGGAACAAAAAACAGGCATTCCTGTCGGGAAACTCCAAGCAGACGAACAAACCAAAATG
AAAGAAATTGACGTCCGTCTAAAAGCACGAGTGATTGGACAGGAACATGCGGTTGATAAAGTGGCGAAAGCCGTGAAAAG
AAGCAGAGCTGGTTTAAAATCGAAACATAGACCAACAGGCTCCTTCCTTTTCGTTGGACCAACAGGTGTCGGGAAAACCG
AATTGTCTAAAACGTTAGCTGAAGAATTATTCGGTTCAAGAGATGCGATCATTCGTTTAGATATGAGTGAGTACATGGAA
AAACACTCTGTGTCCAAACTCATCGGTTCTCCTCCTGGTTACGTTGGACATGATGAAGCTGGCCAGCTGACTGAAAAAGT
GCGCAGAAAACCATACAGCATCATTTTGCTGGATGAAATCGAAAAAGCACACCCAGATGTACAGCACATGTTCCTGCAAA
TCATGGAAGATGGCCGCTTAACAGACAGCCAAGGCAGAACGGTCAGCTTTAAAGATACAGTCATCATCATGACAAGTAAC
GCAGGCAGCGCAGATAAAACGGTCAAGGTCGGCTTCCAGTCTGATCAGGGAGAAGCGATTGAGGAACAATCACTCATTGA
TTCACTAAGCAGCTACTTCAAACCAGAATTTTTGAACCGTTTTGACAGCATCATTCAGTTTGAATCATTAGACAGAGATG
ATTTAGTGAAGATTGTTGATCTTCTGCTCAATGAGCTGTCAGAGCAATTAAAAGAGCAGAATTTAACAGTCCATGTCACA
AATGAAGCGAAAGAAAAAATCGCAGAGCTTGGATATCACCCTGCATTTGGTGCTCGTCCACTTCGAAGAACCATCCAAGA
GCACGTTGAAGACCAAATGACGGAGATCCTGCTTGAAGAGGAGCAGCTTTCTGGATTTACTGTGGATGTTGAACATGACG
AAATCGTCGTAAAAAAAGGATAA

Domains

Predicted by InterproScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(116-248)

AAA lid domain (AAA_lid_9)

(253-353)

AAA domain (Cdc48 subfamily) (AAA_2)

(437-604)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(610-687)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

56.757

100

0.6
  clpE Streptococcus mutans UA159

56.393

100

0.599
  clpE Streptococcus pneumoniae Rx1

55.647

100

0.577
  clpE Streptococcus pneumoniae D39

55.647

100

0.577
  clpE Streptococcus pneumoniae R6

55.647

100

0.577
  clpE Streptococcus pneumoniae TIGR4

55.51

100

0.576
  clpC Bacillus subtilis subsp. subtilis str. 168

53.363

95.571

0.51
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

47.484

90.857

0.431
  clpC Streptococcus thermophilus LMD-9

46.13

92.286

0.426
  clpC Streptococcus thermophilus LMG 18311

45.975

92.286

0.424
  clpC Streptococcus pneumoniae TIGR4

44.359

92.429

0.41
  clpC Streptococcus pneumoniae Rx1

44.548

91.714

0.409
  clpC Streptococcus pneumoniae D39

44.548

91.714

0.409
  clpC Streptococcus mutans UA159

44.15

91.571

0.404
  clpA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

42.027

86

0.361

Multiple sequence alignment