Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | NSU11_RS11380 | Genome accession | NZ_CP151981 |
| Coordinates | 2257604..2257939 (+) | Length | 111 a.a. |
| NCBI ID | WP_024422969.1 | Uniprot ID | - |
| Organism | Bacillus sp. FSL R5-0712 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2252604..2262939
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NSU11_RS11360 (NSU11_11360) | gcvT | 2253083..2254180 (-) | 1098 | WP_024427995.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| NSU11_RS11365 (NSU11_11365) | - | 2254742..2256412 (+) | 1671 | WP_024427994.1 | SNF2-related protein | - |
| NSU11_RS11370 (NSU11_11370) | - | 2256427..2257224 (+) | 798 | WP_024422968.1 | YqhG family protein | - |
| NSU11_RS11375 (NSU11_11375) | - | 2257406..2257570 (+) | 165 | WP_073206269.1 | anti-repressor SinI family protein | - |
| NSU11_RS11380 (NSU11_11380) | sinR | 2257604..2257939 (+) | 336 | WP_024422969.1 | transcriptional regulator SinR | Regulator |
| NSU11_RS11385 (NSU11_11385) | - | 2258007..2258807 (-) | 801 | WP_024422970.1 | TasA family protein | - |
| NSU11_RS11390 (NSU11_11390) | - | 2258862..2259434 (-) | 573 | WP_024422971.1 | signal peptidase I | - |
| NSU11_RS11395 (NSU11_11395) | tapA | 2259487..2260014 (-) | 528 | WP_024422972.1 | amyloid fiber anchoring/assembly protein TapA | - |
| NSU11_RS11400 (NSU11_11400) | - | 2260314..2260592 (+) | 279 | WP_171464609.1 | DUF3889 domain-containing protein | - |
| NSU11_RS11405 (NSU11_11405) | - | 2260627..2260821 (-) | 195 | WP_024422974.1 | YqzE family protein | - |
| NSU11_RS11410 (NSU11_11410) | comGG | 2260888..2261271 (-) | 384 | WP_151862661.1 | competence type IV pilus minor pilin ComGG | - |
| NSU11_RS11415 (NSU11_11415) | comGF | 2261268..2261795 (-) | 528 | WP_342493582.1 | competence type IV pilus minor pilin ComGF | - |
| NSU11_RS11420 (NSU11_11420) | comGE | 2261707..2262021 (-) | 315 | WP_283859498.1 | competence type IV pilus minor pilin ComGE | - |
| NSU11_RS11425 (NSU11_11425) | comGD | 2262005..2262451 (-) | 447 | WP_024422976.1 | competence type IV pilus minor pilin ComGD | - |
| NSU11_RS11430 (NSU11_11430) | comGC | 2262444..2262737 (-) | 294 | WP_024422977.1 | competence type IV pilus major pilin ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12978.56 Da Isoelectric Point: 5.0026
>NTDB_id=983252 NSU11_RS11380 WP_024422969.1 2257604..2257939(+) (sinR) [Bacillus sp. FSL R5-0712]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE
Nucleotide
Download Length: 336 bp
>NTDB_id=983252 NSU11_RS11380 WP_024422969.1 2257604..2257939(+) (sinR) [Bacillus sp. FSL R5-0712]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
94.595 |
100 |
0.946 |