Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NSS96_RS16605 Genome accession   NZ_CP151980
Coordinates   3209176..3209865 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus sp. FSL W7-1336     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3204176..3214865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS96_RS16570 (NSS96_16570) - 3204255..3204737 (-) 483 WP_024423619.1 flagellar protein FlgN -
  NSS96_RS16575 (NSS96_16575) flgM 3204756..3205019 (-) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  NSS96_RS16580 (NSS96_16580) - 3205099..3205518 (-) 420 WP_034281098.1 TIGR03826 family flagellar region protein -
  NSS96_RS16585 (NSS96_16585) comFC 3205575..3206231 (-) 657 WP_260983460.1 ComF family protein Machinery gene
  NSS96_RS16590 (NSS96_16590) - 3206258..3206551 (-) 294 WP_024423623.1 competence protein ComFB -
  NSS96_RS16595 (NSS96_16595) comFA 3206600..3208000 (-) 1401 WP_309300290.1 DEAD/DEAH box helicase Machinery gene
  NSS96_RS16600 (NSS96_16600) - 3208118..3208960 (-) 843 WP_024423625.1 DegV family protein -
  NSS96_RS16605 (NSS96_16605) degU 3209176..3209865 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  NSS96_RS16610 (NSS96_16610) degS 3209930..3211105 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  NSS96_RS16615 (NSS96_16615) - 3211326..3211994 (+) 669 WP_012011434.1 YigZ family protein -
  NSS96_RS16620 (NSS96_16620) - 3211979..3213070 (+) 1092 WP_034281103.1 LCP family protein -
  NSS96_RS16625 (NSS96_16625) - 3213106..3214173 (-) 1068 WP_024423627.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=983211 NSS96_RS16605 WP_008348273.1 3209176..3209865(-) (degU) [Bacillus sp. FSL W7-1336]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=983211 NSS96_RS16605 WP_008348273.1 3209176..3209865(-) (degU) [Bacillus sp. FSL W7-1336]
GTGACTAAAGTAAATATTGTAATTATTGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTTGAGGCTACAAAGCAGCTTGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTAACACATGCATTGAAAACAGGGGCGAGAGGCTACCTGTTAAAAGA
AATGGATGCAGACACACTCATCGAAGCAGTGAAAGTTGTAGCTGACGGAGGCTCTTATTTACACCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCCTAGCGACTAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACTAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGAATCGG
TGAATCGCTCTTTATTAGTGAGAAAACAGTTAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCTATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment