Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ACN3VN_RS10835 Genome accession   NZ_CP183396
Coordinates   2350274..2351884 (-) Length   536 a.a.
NCBI ID   WP_058569270.1    Uniprot ID   -
Organism   Xylella fastidiosa strain CFBP8074     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2345274..2356884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN3VN_RS10820 (ACN3VN_10820) pilA/pilAI 2345568..2346008 (+) 441 WP_058569267.1 pilin Machinery gene
  ACN3VN_RS10825 (ACN3VN_10825) pilB 2346849..2348582 (+) 1734 WP_058569268.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACN3VN_RS10830 (ACN3VN_10830) - 2348676..2350088 (-) 1413 WP_058569269.1 sigma-54-dependent transcriptional regulator -
  ACN3VN_RS10835 (ACN3VN_10835) pilS 2350274..2351884 (-) 1611 WP_058569270.1 sensor histidine kinase Regulator
  ACN3VN_RS10840 (ACN3VN_10840) sucC 2352133..2353296 (+) 1164 WP_046418841.1 ADP-forming succinate--CoA ligase subunit beta -
  ACN3VN_RS10845 (ACN3VN_10845) sucD 2353325..2354197 (+) 873 WP_046418458.1 succinate--CoA ligase subunit alpha -
  ACN3VN_RS10850 (ACN3VN_10850) - 2354649..2354903 (-) 255 WP_140190032.1 hypothetical protein -
  ACN3VN_RS10855 (ACN3VN_10855) - 2354941..2355147 (-) 207 Protein_2122 ESPR-type extended signal peptide-containing protein -

Sequence

Protein


Download         Length: 536 a.a.        Molecular weight: 59149.49 Da        Isoelectric Point: 6.1901

>NTDB_id=983208 ACN3VN_RS10835 WP_058569270.1 2350274..2351884(-) (pilS) [Xylella fastidiosa strain CFBP8074]
MLFSASLIHRIEFAPQRELYFLALYRILEAGLIAALVFSPVSILVDPESDPYLGTAVAVGYLLLATILLVWGRNERWFTP
LVFGSTVADILAATLAIHALPKASAGIAMMLLFNVAAAAILLRLRFSMILAWIAGVAMLVEYIWTVLSEGDSSRSLAELV
MFFTSYTAVAYMCHQAAQRARYSQALAEKRRAQIVNLAEINELIIRRMRTGVLVVDAANRIGLSNETAAALLGYDRQLVE
SDYDLATVAPELTMRLKCWRIGRHYEDTPLRLAPDQPEVQPRFVSLLADSGLTLIFLDDVSVVSRRAESLTLLALGRFSA
SLAHEIRNPLAAIKHASQLLEESSNLDKADQRLLEIILKQCQRTNGIVESVLGLARRERANPENLDLVGFVSRFVDEYRQ
TLSSEYDNLEIQTLHSTVQALVDPRHLYQILAVLTHNALRYGRFPDTPAQVRIEVVYTGGSVGINVLDQGPGIPDAAVLQ
LFQPFFTTSDHGTGLGLYIARELCNANQSNLEYVAIPGGGACFRITLPGPYALIPK

Nucleotide


Download         Length: 1611 bp        

>NTDB_id=983208 ACN3VN_RS10835 WP_058569270.1 2350274..2351884(-) (pilS) [Xylella fastidiosa strain CFBP8074]
GTGTTGTTCAGCGCTTCGCTGATTCATCGGATCGAATTTGCCCCGCAGCGTGAACTTTATTTTCTCGCCTTGTATCGGAT
ATTGGAGGCTGGATTGATCGCGGCCTTGGTGTTCAGTCCGGTGTCGATATTGGTGGATCCTGAGAGTGATCCATATTTGG
GCACGGCTGTCGCTGTCGGTTATTTGCTGTTGGCTACCATTTTGTTGGTCTGGGGTCGTAATGAGCGCTGGTTCACTCCA
TTAGTCTTTGGAAGTACTGTCGCCGACATTTTGGCTGCCACTCTTGCTATTCACGCCCTGCCTAAAGCCAGTGCCGGCAT
TGCGATGATGTTGTTGTTTAACGTTGCCGCCGCCGCCATCTTATTGCGGTTGCGTTTCAGCATGATCCTGGCTTGGATTG
CTGGGGTTGCGATGCTTGTGGAATACATCTGGACGGTACTCAGTGAGGGTGACTCATCACGTTCACTGGCCGAGCTCGTT
ATGTTTTTCACCAGCTACACTGCAGTGGCGTATATGTGTCATCAGGCCGCGCAGCGGGCCAGATATAGCCAAGCTCTGGC
TGAAAAGCGCCGTGCCCAGATAGTCAACTTGGCAGAGATCAACGAGCTGATTATCCGACGTATGCGGACGGGTGTGTTGG
TGGTGGATGCTGCTAATCGAATCGGTTTGAGTAACGAAACTGCAGCTGCGTTGCTGGGATACGACAGACAATTGGTCGAG
AGTGATTACGATCTCGCTACGGTTGCTCCGGAGTTGACAATGCGTCTGAAGTGTTGGCGTATCGGTCGACACTACGAAGA
TACTCCGTTGCGATTAGCGCCTGATCAACCTGAGGTCCAGCCTCGCTTTGTGAGTCTGCTTGCCGACAGTGGATTGACAT
TAATTTTCCTTGATGATGTCAGTGTTGTTTCACGCCGTGCCGAATCGTTGACTTTGTTGGCGCTTGGACGTTTTTCAGCC
AGTTTGGCACACGAGATTCGTAATCCTTTGGCTGCAATCAAACATGCATCGCAGCTCTTGGAAGAGTCCTCCAATCTTGA
CAAAGCCGATCAACGGCTGTTGGAGATTATTCTAAAGCAGTGCCAGCGGACCAATGGGATTGTGGAGAGCGTGCTTGGCT
TGGCAAGACGCGAACGTGCTAACCCGGAAAATTTGGATTTGGTCGGTTTCGTGTCCCGATTTGTCGATGAATACCGCCAG
ACATTGTCAAGCGAGTATGACAATCTGGAAATACAAACGTTGCACAGTACCGTGCAGGCACTGGTGGATCCACGCCACTT
GTACCAGATCCTCGCTGTCCTTACCCACAACGCGTTGCGTTATGGCCGCTTTCCGGATACTCCAGCACAGGTGCGTATTG
AGGTGGTATATACCGGAGGCAGCGTGGGGATCAATGTCCTTGATCAGGGGCCTGGTATACCCGATGCGGCTGTTTTGCAG
CTTTTTCAGCCTTTTTTCACTACTTCCGACCATGGTACGGGGCTTGGTCTATACATCGCTCGTGAGCTGTGCAACGCGAA
TCAATCCAATCTTGAGTACGTGGCCATTCCAGGGGGCGGGGCTTGTTTCCGGATTACTTTGCCGGGTCCGTATGCATTGA
TTCCGAAGTGA

Domains

Predicted by InterProScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(314-378)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(423-528)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

37.643

98.134

0.369

Multiple sequence alignment