Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   ACN3VN_RS07755 Genome accession   NZ_CP183396
Coordinates   1656015..1657406 (+) Length   463 a.a.
NCBI ID   WP_058569164.1    Uniprot ID   -
Organism   Xylella fastidiosa strain CFBP8074     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1651015..1662406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN3VN_RS07735 (ACN3VN_07735) - 1651528..1652070 (+) 543 WP_004090677.1 Dps family protein -
  ACN3VN_RS07740 (ACN3VN_07740) recQ 1652250..1654052 (+) 1803 WP_058569167.1 DNA helicase RecQ Machinery gene
  ACN3VN_RS07745 (ACN3VN_07745) - 1654175..1654651 (+) 477 WP_058569166.1 hypothetical protein -
  ACN3VN_RS07750 (ACN3VN_07750) - 1654852..1655817 (-) 966 WP_058569165.1 LLM class flavin-dependent oxidoreductase -
  ACN3VN_RS07755 (ACN3VN_07755) radA/sms 1656015..1657406 (+) 1392 WP_058569164.1 DNA repair protein RadA Machinery gene
  ACN3VN_RS07760 (ACN3VN_07760) trpA 1657638..1658444 (-) 807 WP_058569163.1 tryptophan synthase subunit alpha -
  ACN3VN_RS07765 (ACN3VN_07765) trpB 1658570..1659787 (-) 1218 WP_024749250.1 tryptophan synthase subunit beta -
  ACN3VN_RS07770 (ACN3VN_07770) - 1660290..1660952 (-) 663 WP_046419411.1 phosphoribosylanthranilate isomerase -
  ACN3VN_RS07775 (ACN3VN_07775) truA 1660949..1661719 (-) 771 WP_046419410.1 tRNA pseudouridine(38-40) synthase TruA -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 49487.84 Da        Isoelectric Point: 8.1752

>NTDB_id=983189 ACN3VN_RS07755 WP_058569164.1 1656015..1657406(+) (radA/sms) [Xylella fastidiosa strain CFBP8074]
MTKNAASKARIAYVCTECGTEYSKWQGQCTECSTWNCLSQITLGHAGSVKNLTMKHGNWTGQLDPPKITALKDVQHSEQA
RISTGIGEFDRVLGGGLVAGAVVLIGGDPGIGKSTLLLQALARMASTLPTLYVTGEESLAQVAGRAVRLDLPLEGLNALA
ETGIESILQHASSARPRLIVADSVQTLWTETLTAAPGSVSQVRESAAQLVRYAKETGTTVFLVGHVTKEGGIAGPRVLEH
MVDAVLYFEGESGSRFRLLRAFKNRFGAVNELGVFAMSEKGLKEVANPSAIFLSGRNSNQPGSCVMVTREGTRPLMIEVQ
ALVDTSPLSNPRRVTVGLEQNRLAMLLAVLHRHGNVLVGDQDVFINIVGGIRVQETAADLPVLLAVRSSLCNRALPEKTI
AFGEVGLSGEIRPVPNGEERLREAATHGFKRAIVPKANAPKSAIKDMQIIAVERLDQALEASY

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=983189 ACN3VN_RS07755 WP_058569164.1 1656015..1657406(+) (radA/sms) [Xylella fastidiosa strain CFBP8074]
ATGACCAAAAACGCCGCAAGCAAAGCCAGGATTGCCTATGTCTGCACTGAATGCGGCACCGAATACAGCAAATGGCAGGG
ACAGTGCACCGAATGCAGCACCTGGAATTGCTTAAGCCAAATCACCCTCGGACATGCAGGATCTGTCAAAAACCTAACCA
TGAAGCACGGCAATTGGACCGGTCAGCTCGACCCACCCAAGATCACCGCATTGAAGGACGTGCAACACAGCGAACAAGCA
CGCATCTCCACCGGCATTGGCGAGTTTGACCGCGTCCTAGGAGGCGGCCTGGTGGCAGGCGCGGTCGTCCTGATTGGTGG
CGATCCAGGTATCGGCAAATCCACACTGCTACTGCAAGCACTAGCACGGATGGCAAGCACCCTACCCACACTGTATGTGA
CGGGTGAAGAATCGCTGGCACAGGTCGCCGGGCGTGCGGTGCGCCTGGATCTCCCCCTGGAGGGCTTAAACGCACTCGCA
GAAACCGGCATTGAATCAATCCTGCAACACGCCAGCAGCGCACGGCCACGACTGATTGTCGCCGACTCAGTACAGACCCT
ATGGACCGAAACACTGACCGCAGCACCCGGTTCAGTCAGCCAAGTACGAGAAAGCGCCGCACAGCTAGTGCGCTACGCCA
AAGAAACCGGCACAACCGTGTTCCTGGTCGGCCATGTCACCAAAGAAGGCGGCATCGCCGGCCCACGCGTACTGGAGCAC
ATGGTAGATGCCGTGCTGTATTTCGAAGGCGAAAGCGGTAGCCGTTTCCGTCTCCTGCGGGCATTCAAAAACCGCTTTGG
AGCAGTCAACGAACTAGGCGTCTTTGCGATGAGCGAAAAAGGCTTGAAAGAGGTCGCCAATCCATCAGCCATTTTTTTAT
CCGGCAGAAACAGCAACCAACCAGGCAGCTGTGTGATGGTCACCCGTGAAGGCACACGCCCCCTGATGATCGAAGTACAA
GCACTCGTCGATACCTCGCCACTGTCCAACCCACGCCGGGTTACCGTCGGGCTGGAACAAAATCGGCTAGCAATGCTGTT
AGCCGTGTTGCATCGTCACGGTAACGTCCTGGTTGGTGACCAAGACGTATTCATCAACATCGTTGGCGGCATCCGCGTTC
AAGAGACAGCCGCAGATCTCCCTGTACTACTGGCGGTCCGGTCCTCGTTATGCAACCGGGCGCTGCCGGAAAAGACCATC
GCCTTCGGCGAAGTAGGTTTATCCGGTGAAATCCGCCCGGTCCCCAACGGCGAAGAGCGCCTCAGAGAAGCAGCAACACA
CGGCTTTAAGCGCGCCATCGTGCCAAAAGCCAACGCACCCAAGAGTGCCATCAAGGACATGCAGATCATCGCCGTAGAAC
GCCTGGATCAGGCGCTGGAAGCAAGCTATTGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(359-438)

AAA domain (AAA_25)

(91-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

45.197

98.92

0.447
  radA Streptococcus pneumoniae Rx1

42.484

99.136

0.421
  radA Streptococcus pneumoniae D39

42.484

99.136

0.421
  radA Streptococcus pneumoniae R6

42.484

99.136

0.421
  radA Streptococcus pneumoniae TIGR4

42.484

99.136

0.421
  radA Streptococcus mitis NCTC 12261

42.484

99.136

0.421
  radA Streptococcus mitis SK321

42.266

99.136

0.419

Multiple sequence alignment