Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   ACN3VN_RS07740 Genome accession   NZ_CP183396
Coordinates   1652250..1654052 (+) Length   600 a.a.
NCBI ID   WP_058569167.1    Uniprot ID   -
Organism   Xylella fastidiosa strain CFBP8074     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1647250..1659052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN3VN_RS07735 (ACN3VN_07735) - 1651528..1652070 (+) 543 WP_004090677.1 Dps family protein -
  ACN3VN_RS07740 (ACN3VN_07740) recQ 1652250..1654052 (+) 1803 WP_058569167.1 DNA helicase RecQ Machinery gene
  ACN3VN_RS07745 (ACN3VN_07745) - 1654175..1654651 (+) 477 WP_058569166.1 hypothetical protein -
  ACN3VN_RS07750 (ACN3VN_07750) - 1654852..1655817 (-) 966 WP_058569165.1 LLM class flavin-dependent oxidoreductase -
  ACN3VN_RS07755 (ACN3VN_07755) radA/sms 1656015..1657406 (+) 1392 WP_058569164.1 DNA repair protein RadA Machinery gene
  ACN3VN_RS07760 (ACN3VN_07760) trpA 1657638..1658444 (-) 807 WP_058569163.1 tryptophan synthase subunit alpha -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 67460.12 Da        Isoelectric Point: 8.3149

>NTDB_id=983188 ACN3VN_RS07740 WP_058569167.1 1652250..1654052(+) (recQ) [Xylella fastidiosa strain CFBP8074]
MSTSSATQTVLQRVFGYDTFRGPQQAIIEHVAAGHDALVLMPTGGGKSLCYQVPALLRKGIGVVISPLIALMQDQVETLR
QLGVRAAYLNSTLDATQAQRIEHALVTADLDLLYIAPERLLTAHFLSLLERSQIALFAIDEAHCVSQWGHDFRPEYRQLT
VLHERWPHVPRIALTATADPPTQREIAERLDLSDAHHFISSFDRPNIRYTVVQKNNMRRQLQEFLGRHRNTAGIVYAMSR
RKTEEIAAYLCTQGYNALPYHAGLPAETRAKHQRCFLREEGIVMCATIAFGMGINKPDVRFVAHIDLPKSLEGYYQETGR
AGRDGEAAEAWMCYSLGDVVLLKQMIEQSEASEARKCVERAKLDHLLGYCESMQCRRQLLLSSFGETYPNPCGNCDNCLT
PATAWDATVLSQKALSCVYRTGQRFGVGHLIDILRGSKSQRILQLGHDQLSTYGIGRDVDERSWRSVFRQLVATHLLEVD
NEGYGGLRLTPSSRPVLKGEHQVMMRRDQFIRERDRTGQRHGLSVLPEDLGLFNALHRLRAQLAKEQNVPAFVIFHDSTL
RHIAEQRPTNLNALSKINGIGSNKLTRYGHQLIELVLAQG

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=983188 ACN3VN_RS07740 WP_058569167.1 1652250..1654052(+) (recQ) [Xylella fastidiosa strain CFBP8074]
ATGAGCACGTCTTCCGCCACCCAGACCGTTCTACAACGCGTCTTCGGCTACGACACCTTCCGTGGGCCCCAGCAAGCCAT
CATTGAGCATGTCGCTGCCGGCCACGATGCCTTAGTCCTGATGCCCACCGGGGGCGGCAAATCATTGTGCTACCAAGTGC
CTGCGCTGCTGCGCAAAGGCATCGGCGTCGTCATCTCACCGCTGATTGCACTGATGCAAGACCAAGTCGAGACCCTACGT
CAGCTTGGCGTACGCGCCGCCTATCTCAACTCGACCCTAGATGCAACGCAGGCACAACGGATCGAACACGCTCTAGTCAC
CGCAGATCTAGACCTGCTGTATATCGCTCCGGAACGGTTACTCACTGCACACTTCTTATCGCTGCTGGAACGTAGCCAGA
TCGCTTTGTTCGCCATCGACGAAGCTCACTGCGTCTCACAGTGGGGACATGATTTCCGTCCCGAATACCGCCAACTCACC
GTACTTCATGAACGCTGGCCACACGTGCCTCGGATTGCACTGACCGCAACCGCCGACCCACCCACACAACGCGAAATTGC
TGAGCGCCTTGACCTAAGCGATGCGCATCACTTCATCAGCTCATTCGACCGCCCCAACATCCGCTACACAGTCGTGCAGA
AAAACAATATGCGGCGCCAACTACAAGAATTCCTCGGCCGCCATCGCAACACCGCAGGCATTGTCTACGCCATGTCACGG
CGCAAAACCGAAGAAATCGCCGCCTATCTGTGTACACAAGGCTACAACGCACTGCCTTACCATGCCGGCCTACCAGCCGA
AACACGGGCCAAGCACCAACGCTGCTTTCTGCGTGAAGAAGGGATTGTGATGTGTGCCACCATCGCCTTCGGCATGGGCA
TCAACAAACCTGATGTCCGCTTTGTCGCCCACATCGACCTCCCCAAATCACTGGAGGGTTATTACCAGGAAACCGGCCGC
GCCGGCCGCGATGGCGAAGCTGCAGAAGCATGGATGTGCTATAGCCTGGGAGACGTCGTACTGCTGAAACAAATGATCGA
ACAAAGCGAAGCCAGCGAAGCACGCAAGTGCGTAGAACGCGCCAAACTCGATCACCTGCTGGGCTACTGCGAATCAATGC
AATGCCGCCGCCAACTCTTACTGTCCAGCTTCGGGGAAACCTATCCAAACCCCTGTGGCAACTGTGACAACTGCCTGACC
CCAGCCACCGCCTGGGATGCCACCGTGCTCTCCCAAAAGGCGTTAAGTTGCGTCTACCGCACTGGCCAGCGCTTCGGGGT
TGGTCACCTCATCGACATACTACGTGGCAGTAAGAGCCAAAGAATATTGCAACTGGGTCATGACCAACTCAGCACCTACG
GCATCGGCCGTGACGTGGATGAACGCAGCTGGCGCAGTGTCTTTCGCCAACTCGTCGCCACACACCTGTTGGAGGTCGAC
AACGAAGGCTACGGCGGCTTACGCCTGACCCCAAGCAGTCGTCCAGTCCTCAAAGGTGAACACCAAGTCATGATGCGTCG
TGATCAGTTCATCCGTGAACGCGACCGTACCGGCCAACGTCACGGACTATCGGTCCTCCCGGAAGATCTGGGACTCTTCA
ATGCCCTGCATCGCTTACGTGCACAACTCGCCAAAGAACAAAACGTGCCGGCATTCGTGATCTTCCATGACAGCACCTTG
CGCCATATTGCCGAGCAACGCCCTACCAACCTCAATGCACTGAGCAAAATCAACGGGATCGGCAGCAACAAACTGACACG
CTATGGCCATCAGTTAATTGAACTCGTACTTGCGCAAGGGTGA

Domains

Predicted by InterProScan.

RQC domain (RQC)

(403-509)

HRDC domain (HRDC)

(530-596)

DEAD/DEAH box helicase (DEAD)

(24-179)

RecQ zinc-binding (RecQ_Zn_bind)

(337-399)

Helicase conserved C-terminal domain (Helicase_C)

(221-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

38.28

98.833

0.378

Multiple sequence alignment