Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   NST13_RS10840 Genome accession   NZ_CP151979
Coordinates   2162977..2164746 (-) Length   589 a.a.
NCBI ID   WP_342581847.1    Uniprot ID   -
Organism   Ureibacillus sp. FSL W7-1570     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2157977..2169746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST13_RS10820 (NST13_10820) - 2158783..2158926 (-) 144 WP_342470956.1 hypothetical protein -
  NST13_RS10825 (NST13_10825) - 2159129..2160151 (-) 1023 WP_342580596.1 cytochrome ubiquinol oxidase subunit I -
  NST13_RS10830 (NST13_10830) - 2160144..2161484 (-) 1341 WP_342580597.1 c-type cytochrome -
  NST13_RS10835 (NST13_10835) - 2161931..2162824 (-) 894 WP_342580598.1 peptidylprolyl isomerase -
  NST13_RS10840 (NST13_10840) rcrQ 2162977..2164746 (-) 1770 WP_342581847.1 ABC transporter ATP-binding protein Regulator
  NST13_RS10845 (NST13_10845) rcrP 2164850..2166604 (-) 1755 WP_342580599.1 ABC transporter ATP-binding protein Regulator
  NST13_RS10850 (NST13_10850) - 2166643..2166849 (+) 207 WP_342580600.1 hypothetical protein -
  NST13_RS10855 (NST13_10855) - 2166859..2167050 (-) 192 WP_342580601.1 hypothetical protein -
  NST13_RS10860 (NST13_10860) - 2168046..2169035 (+) 990 WP_342470949.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65724.50 Da        Isoelectric Point: 6.8339

>NTDB_id=983142 NST13_RS10840 WP_342581847.1 2162977..2164746(-) (rcrQ) [Ureibacillus sp. FSL W7-1570]
MGMPAGKASDFKKTMKQLFIYCKDYVPFIAIAMSLALIAAILNVYGPDKLKEMTDIIQEGLMTSIDLEAIKAVGFFLAAL
YGFSFAINYIQGFIMATVTQKITKKMRTDLSQKINRLPLSYFDRTTYGDVLSRVTNDVDMIGQTLNNSISQLVSAIATFV
GALVMMFYTNWIMALTGILATFIGFSFMSVIIKYSQKYFIGQQTELGAINGHIEEIYTGQHIVKAYNAENEAKSKFHAIN
DRLYQNAWKSQFLSGMMMPLMQFIGNFGYVAVCIVGAYLVTADAITIGTIVAFMIYIRLFTQPLTQFAQVGTNLQSTAAA
SERVFEFLAEEELKPEIQKLGKLGDIKGNVEFKNVRFGYDQDRLIIKDFSVSVKAGQKVAIVGPTGAGKTTLVNLLMRFY
EVNSGEIMIDGIPIHQLTREQVHDLFSMVLQDVWLFEGTIRENIAFSKKDVTDEEIISVCQSIGLHHAIQALPNGYDTVL
NDKVNLSNGQKQLLTIARAMIKNAPLLILDEATSSVDTRTELQIQRAMEKLAVGKTSFIIAHRLSTIKHADLILVMRDGE
IIEKGTHEELLGKNGFYAELYKSQFEQVS

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=983142 NST13_RS10840 WP_342581847.1 2162977..2164746(-) (rcrQ) [Ureibacillus sp. FSL W7-1570]
ATGGGAATGCCTGCAGGTAAAGCAAGCGACTTCAAAAAAACGATGAAGCAGCTATTTATTTACTGCAAAGACTATGTGCC
TTTTATTGCGATTGCAATGAGTTTGGCCTTAATTGCCGCCATCCTTAATGTCTATGGTCCAGATAAGTTGAAGGAAATGA
CGGATATCATTCAAGAAGGATTAATGACTTCGATTGATCTGGAAGCGATTAAAGCTGTAGGATTTTTTCTGGCCGCCCTT
TACGGATTCAGTTTTGCCATCAATTATATTCAAGGTTTCATTATGGCAACCGTAACGCAAAAAATTACGAAAAAAATGCG
CACGGATCTATCACAGAAAATCAATCGGCTGCCTTTAAGTTATTTTGACCGAACAACGTATGGAGATGTACTGAGCCGTG
TGACAAATGATGTTGATATGATTGGACAGACGCTGAACAACAGTATAAGCCAGCTGGTGTCCGCCATTGCCACCTTTGTC
GGCGCCTTGGTGATGATGTTTTATACCAACTGGATTATGGCGCTGACCGGAATATTGGCTACATTCATCGGTTTTTCGTT
TATGTCGGTGATCATCAAGTATTCCCAAAAATATTTTATTGGGCAGCAAACAGAACTGGGCGCCATCAACGGACATATCG
AAGAAATTTATACGGGACAACATATTGTGAAGGCCTATAATGCAGAAAATGAGGCGAAGTCAAAATTTCATGCAATCAAT
GACCGGTTATACCAAAATGCATGGAAATCGCAATTTTTGTCCGGCATGATGATGCCGCTCATGCAATTTATCGGCAATTT
TGGCTATGTGGCCGTGTGCATTGTTGGGGCGTACCTTGTGACGGCAGATGCCATCACCATTGGAACCATTGTGGCATTCA
TGATTTATATTCGCCTATTTACACAGCCTTTGACCCAGTTTGCCCAAGTGGGTACCAATCTGCAATCTACGGCAGCAGCC
AGTGAACGGGTTTTTGAATTTTTGGCGGAAGAGGAATTGAAGCCTGAAATCCAAAAACTTGGAAAACTTGGGGACATTAA
AGGAAATGTGGAATTTAAAAATGTCCGTTTTGGTTATGATCAAGACCGGTTGATTATTAAAGATTTTTCGGTTTCGGTTA
AAGCCGGGCAAAAAGTCGCCATTGTCGGTCCAACCGGCGCGGGAAAAACGACATTGGTGAACCTGCTCATGCGGTTTTAT
GAAGTGAACAGCGGCGAAATCATGATTGATGGCATACCAATTCATCAATTAACGAGGGAACAAGTCCACGATCTGTTTTC
AATGGTGCTTCAAGATGTGTGGCTGTTTGAAGGAACCATCCGTGAAAATATCGCCTTTTCCAAAAAGGATGTCACAGACG
AAGAAATCATTTCCGTTTGCCAGTCAATTGGACTTCATCATGCCATTCAGGCATTGCCGAATGGTTATGACACCGTTCTG
AATGATAAAGTGAATTTATCCAATGGACAGAAGCAATTATTGACGATTGCCCGCGCCATGATCAAAAATGCTCCGTTATT
GATTCTGGATGAAGCGACAAGTTCCGTCGATACCAGAACGGAATTGCAAATTCAACGGGCAATGGAAAAATTGGCAGTCG
GAAAAACTTCATTTATTATTGCCCACCGTCTTTCAACTATCAAACATGCGGATTTGATCCTGGTAATGAGAGACGGAGAA
ATTATTGAAAAGGGCACTCACGAAGAACTGCTCGGGAAAAATGGATTCTACGCAGAGTTGTATAAAAGCCAATTTGAACA
AGTATCCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(367-514)

ABC transporter transmembrane region (ABC_membrane)

(30-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

55.208

97.793

0.54

Multiple sequence alignment