Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   NSQ17_RS11570 Genome accession   NZ_CP151975
Coordinates   2251042..2252112 (-) Length   356 a.a.
NCBI ID   WP_058336648.1    Uniprot ID   -
Organism   Bacillus sp. FSL W8-0629     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2246042..2257112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ17_RS11520 (NSQ17_11520) - 2246137..2246709 (-) 573 WP_017357979.1 signal peptidase I -
  NSQ17_RS11525 (NSQ17_11525) tapA 2246759..2247286 (-) 528 WP_160757525.1 amyloid fiber anchoring/assembly protein TapA -
  NSQ17_RS11530 (NSQ17_11530) - 2247539..2247865 (+) 327 WP_039166025.1 DUF3889 domain-containing protein -
  NSQ17_RS11535 (NSQ17_11535) - 2247900..2248094 (-) 195 WP_024718846.1 YqzE family protein -
  NSQ17_RS11540 (NSQ17_11540) comGG 2248155..2248538 (-) 384 WP_160757524.1 competence type IV pilus minor pilin ComGG -
  NSQ17_RS11545 (NSQ17_11545) comGF 2248535..2249032 (-) 498 WP_160757523.1 competence type IV pilus minor pilin ComGF -
  NSQ17_RS11550 (NSQ17_11550) comGE 2248974..2249252 (-) 279 WP_306794195.1 competence type IV pilus minor pilin ComGE -
  NSQ17_RS11555 (NSQ17_11555) comGD 2249272..2249718 (-) 447 WP_342467442.1 competence type IV pilus minor pilin ComGD -
  NSQ17_RS11560 (NSQ17_11560) comGC 2249711..2250004 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  NSQ17_RS11565 (NSQ17_11565) comGB 2250021..2251061 (-) 1041 WP_024718840.1 competence type IV pilus assembly protein ComGB -
  NSQ17_RS11570 (NSQ17_11570) comGA 2251042..2252112 (-) 1071 WP_058336648.1 competence type IV pilus ATPase ComGA Machinery gene
  NSQ17_RS11575 (NSQ17_11575) - 2252571..2253443 (-) 873 WP_035390819.1 STAS domain-containing protein -
  NSQ17_RS11585 (NSQ17_11585) - 2253669..2254049 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  NSQ17_RS11590 (NSQ17_11590) - 2254273..2254515 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -
  NSQ17_RS11595 (NSQ17_11595) - 2254564..2255202 (-) 639 WP_017357989.1 MBL fold metallo-hydrolase -
  NSQ17_RS11600 (NSQ17_11600) - 2255363..2255536 (+) 174 WP_003217333.1 DUF2759 domain-containing protein -
  NSQ17_RS11605 (NSQ17_11605) - 2255561..2255875 (-) 315 WP_017367597.1 MTH1187 family thiamine-binding protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40364.69 Da        Isoelectric Point: 9.0449

>NTDB_id=982914 NSQ17_RS11570 WP_058336648.1 2251042..2252112(-) (comGA) [Bacillus sp. FSL W8-0629]
MYGIEYLGQELLEEACRMRASDVHIVPREKEASVSFRVDADLIQQRIIDKKSGERLIAHFKFLSSMDIGERRRPQNGSLA
VMLRRGQVFVRLSTLPTVNDESLVIRILPQDHVPKTKYLSLFPKASTRLLSFLNHSHGLILFTGPTNSGKTTTLYSLIQF
AKKHFNRNIITLEDPVETRNEEVLQVQVNEKAGITYAAGLRAILRHDPDMIVLGEIRDAETARTAIRAALTGHLVMSTLH
AKNAKGALYRMLEFGVTVNELEQTMVAIAAQRLIELACPFCGETCELYCKLNRPVRRTNVFELLYGKELGECIKEAKGEY
AHSSYETLQRLIRKGVALGYLSKSTYHRWVYEEANL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=982914 NSQ17_RS11570 WP_058336648.1 2251042..2252112(-) (comGA) [Bacillus sp. FSL W8-0629]
TTGTATGGTATTGAATATTTGGGGCAAGAGCTGCTAGAAGAGGCGTGCCGCATGAGAGCATCTGATGTGCATATTGTTCC
GAGAGAAAAGGAAGCTTCAGTCTCTTTTCGTGTAGACGCTGACCTCATTCAGCAGCGGATCATTGACAAAAAGAGCGGAG
AGCGGCTCATTGCTCATTTCAAATTTTTATCTTCTATGGATATTGGTGAAAGAAGGAGACCACAAAATGGTTCATTGGCT
GTGATGTTAAGGCGCGGTCAAGTGTTTGTTCGGCTCTCTACACTACCAACTGTAAATGATGAAAGTCTAGTGATTCGGAT
TTTACCGCAGGATCATGTGCCGAAAACAAAGTATTTGTCACTGTTCCCGAAGGCTTCAACGAGATTATTATCGTTTCTGA
ATCATTCGCATGGGCTCATTTTATTTACAGGACCAACAAATTCAGGGAAAACGACAACACTTTATTCATTGATTCAGTTT
GCCAAAAAACATTTTAATCGGAATATTATTACCCTTGAAGATCCTGTGGAAACAAGAAATGAAGAAGTGCTGCAGGTTCA
AGTAAATGAAAAAGCTGGCATCACGTATGCGGCAGGTTTACGCGCTATTTTAAGACATGATCCAGATATGATTGTGCTTG
GAGAAATAAGAGATGCGGAAACAGCCAGAACAGCTATTAGAGCAGCTTTGACAGGTCATTTAGTCATGAGCACATTGCAC
GCAAAGAATGCAAAAGGAGCTCTTTATCGAATGCTCGAATTTGGTGTGACGGTGAATGAACTCGAACAAACAATGGTTGC
TATTGCTGCTCAGCGGTTAATCGAACTCGCATGTCCATTTTGCGGCGAAACGTGTGAGCTTTATTGCAAACTAAATCGGC
CAGTCAGACGAACAAATGTATTTGAATTGCTTTACGGAAAGGAGCTTGGTGAGTGTATCAAAGAGGCAAAAGGAGAATAC
GCTCATTCGTCATACGAAACACTGCAAAGGTTAATTCGGAAAGGAGTGGCACTCGGCTATTTATCAAAAAGCACATATCA
TCGCTGGGTTTATGAAGAAGCGAACCTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

64.326

100

0.643

Multiple sequence alignment