Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   NSS78_RS06875 Genome accession   NZ_CP151974
Coordinates   1391666..1392247 (+) Length   193 a.a.
NCBI ID   WP_003210851.1    Uniprot ID   -
Organism   Bacillus sp. FSL W8-0920     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1386666..1397247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS78_RS06845 (NSS78_06845) dapD 1386788..1387498 (+) 711 WP_003212204.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  NSS78_RS06850 (NSS78_06850) - 1387533..1388711 (+) 1179 WP_050782659.1 N-acetyldiaminopimelate deacetylase -
  NSS78_RS06855 (NSS78_06855) - 1388762..1389004 (+) 243 WP_003211408.1 YkuS family protein -
  NSS78_RS06860 (NSS78_06860) - 1389034..1389840 (-) 807 WP_137054698.1 mechanosensitive ion channel family protein -
  NSS78_RS06865 (NSS78_06865) ahpA 1390112..1390654 (+) 543 WP_003211758.1 biofilm-specific peroxidase AhpA -
  NSS78_RS06870 (NSS78_06870) - 1390737..1391195 (+) 459 WP_003211884.1 TlpA disulfide reductase family protein -
  NSS78_RS06875 (NSS78_06875) rok 1391666..1392247 (+) 582 WP_003210851.1 transcriptional regulator Rok Regulator
  NSS78_RS06880 (NSS78_06880) - 1392300..1393217 (-) 918 WP_050945137.1 hypothetical protein -
  NSS78_RS06885 (NSS78_06885) - 1393302..1393883 (+) 582 WP_212045816.1 molybdenum cofactor guanylyltransferase -
  NSS78_RS06890 (NSS78_06890) - 1393914..1394930 (+) 1017 WP_212045817.1 thiazole biosynthesis adenylyltransferase ThiF -
  NSS78_RS06895 (NSS78_06895) glp 1394940..1396217 (+) 1278 WP_309216619.1 gephyrin-like molybdotransferase Glp -
  NSS78_RS06900 (NSS78_06900) mobB 1396199..1396723 (+) 525 WP_137054693.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  NSS78_RS06905 (NSS78_06905) - 1396720..1397211 (+) 492 WP_212045819.1 molybdenum cofactor biosynthesis protein MoaE -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21839.83 Da        Isoelectric Point: 9.7310

>NTDB_id=982840 NSS78_RS06875 WP_003210851.1 1391666..1392247(+) (rok) [Bacillus sp. FSL W8-0920]
MFNEREALRLRLEQLNEAEVKVIREYQIERDTIYAKLRELDRHGTGLVSDTKKEVRTERKTDSLPVLAELAAQEMRSYQP
PAQSQSNAVSTLGTGQLNGAPVGIPEGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNM
TTFMQSLIKMYPEVKKPYRGQYILEGDIQTEDE

Nucleotide


Download         Length: 582 bp        

>NTDB_id=982840 NSS78_RS06875 WP_003210851.1 1391666..1392247(+) (rok) [Bacillus sp. FSL W8-0920]
TTGTTTAATGAGAGGGAAGCGTTACGATTACGATTGGAACAATTAAACGAAGCAGAAGTAAAGGTCATCCGTGAATATCA
AATTGAGCGAGATACGATTTATGCAAAATTAAGAGAATTAGACCGTCATGGAACAGGTCTAGTGTCAGATACAAAAAAAG
AAGTGCGTACAGAAAGAAAAACGGATTCACTGCCTGTATTAGCTGAACTGGCTGCACAAGAAATGAGAAGCTACCAGCCG
CCTGCACAATCACAATCAAATGCTGTATCAACTTTAGGAACAGGACAGCTAAACGGTGCACCTGTAGGTATTCCTGAAGG
ATCTACAAGACGCAGAAGAGGCACAGCTCGCCCTGGTTCAAAGGCAGCTAAGCTTCGCGAAGCTGCGATTAAAACGTTAA
AGCGTCATAATGCAGCGATTAAAAGCTCTGAACTTCAAAAAGAAATTGAAAAAGAGAGCGGTCTTGAAATTCCAAATATG
ACAACGTTTATGCAAAGCTTAATTAAAATGTATCCTGAAGTGAAAAAGCCATATCGCGGACAGTATATTTTAGAAGGCGA
TATTCAAACAGAAGACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

81.053

98.446

0.798

Multiple sequence alignment