Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   NSQ52_RS11490 Genome accession   NZ_CP151973
Coordinates   2253079..2253372 (-) Length   97 a.a.
NCBI ID   WP_008342186.1    Uniprot ID   A0A5K1NAM4
Organism   Bacillus sp. FSL W8-1141     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2248079..2258372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ52_RS11440 (NSQ52_11440) sinR 2248243..2248578 (+) 336 WP_017357978.1 helix-turn-helix domain-containing protein Regulator
  NSQ52_RS11445 (NSQ52_11445) - 2248646..2249446 (-) 801 WP_008342195.1 TasA family protein -
  NSQ52_RS11450 (NSQ52_11450) - 2249505..2250077 (-) 573 WP_058336655.1 signal peptidase I -
  NSQ52_RS11455 (NSQ52_11455) tapA 2250127..2250654 (-) 528 WP_058336654.1 amyloid fiber anchoring/assembly protein TapA -
  NSQ52_RS11460 (NSQ52_11460) - 2250907..2251233 (+) 327 WP_058336653.1 DUF3889 domain-containing protein -
  NSQ52_RS11465 (NSQ52_11465) - 2251268..2251462 (-) 195 WP_024718846.1 YqzE family protein -
  NSQ52_RS11470 (NSQ52_11470) comGG 2251523..2251906 (-) 384 WP_058336652.1 competence type IV pilus minor pilin ComGG -
  NSQ52_RS11475 (NSQ52_11475) comGF 2251903..2252400 (-) 498 WP_039166031.1 competence type IV pilus minor pilin ComGF -
  NSQ52_RS11480 (NSQ52_11480) comGE 2252342..2252656 (-) 315 WP_007501227.1 competence type IV pilus minor pilin ComGE -
  NSQ52_RS11485 (NSQ52_11485) comGD 2252640..2253086 (-) 447 WP_058336650.1 competence type IV pilus minor pilin ComGD -
  NSQ52_RS11490 (NSQ52_11490) comGC 2253079..2253372 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  NSQ52_RS11495 (NSQ52_11495) comGB 2253389..2254429 (-) 1041 WP_058336649.1 competence type IV pilus assembly protein ComGB -
  NSQ52_RS11500 (NSQ52_11500) comGA 2254410..2255480 (-) 1071 WP_342473345.1 competence type IV pilus ATPase ComGA Machinery gene
  NSQ52_RS11505 (NSQ52_11505) - 2255937..2256809 (-) 873 WP_035390819.1 STAS domain-containing protein -
  NSQ52_RS11515 (NSQ52_11515) - 2257035..2257415 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  NSQ52_RS11520 (NSQ52_11520) - 2257628..2257870 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10728.62 Da        Isoelectric Point: 6.7081

>NTDB_id=982791 NSQ52_RS11490 WP_008342186.1 2253079..2253372(-) (comGC) [Bacillus sp. FSL W8-1141]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQSIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIFIQNGDVKNE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=982791 NSQ52_RS11490 WP_008342186.1 2253079..2253372(-) (comGC) [Bacillus sp. FSL W8-1141]
ATGAATGATAAAGGATTTACACTGTTAGAAATGTTAATTGTCATGCTTGTGATCTCCATTCTTTTATTGATCACCATTCC
AAATATCACTCGGCATCATCAAAGCATTCAAGCAAAGGGCTGTGAAGGGCTGAAATCAATGGTGAGTACACAGGTAATGG
CATATGAATTAGAGCATGACGGCAAGACGCCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAAAGGATTAACT
TGTCCGAATGGAAAGGCAATTTTCATTCAAAACGGGGATGTGAAAAATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NAM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

67.01

100

0.67
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392

Multiple sequence alignment