Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | NSQ52_RS11440 | Genome accession | NZ_CP151973 |
| Coordinates | 2248243..2248578 (+) | Length | 111 a.a. |
| NCBI ID | WP_017357978.1 | Uniprot ID | - |
| Organism | Bacillus sp. FSL W8-1141 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2243243..2253578
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NSQ52_RS11420 (NSQ52_11420) | gcvT | 2243719..2244816 (-) | 1098 | WP_072367814.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| NSQ52_RS11425 (NSQ52_11425) | - | 2245378..2247048 (+) | 1671 | WP_008342199.1 | SNF2-related protein | - |
| NSQ52_RS11430 (NSQ52_11430) | - | 2247063..2247860 (+) | 798 | WP_017367588.1 | YqhG family protein | - |
| NSQ52_RS11435 (NSQ52_11435) | - | 2248045..2248209 (+) | 165 | WP_008342197.1 | anti-repressor SinI family protein | - |
| NSQ52_RS11440 (NSQ52_11440) | sinR | 2248243..2248578 (+) | 336 | WP_017357978.1 | helix-turn-helix domain-containing protein | Regulator |
| NSQ52_RS11445 (NSQ52_11445) | - | 2248646..2249446 (-) | 801 | WP_008342195.1 | TasA family protein | - |
| NSQ52_RS11450 (NSQ52_11450) | - | 2249505..2250077 (-) | 573 | WP_058336655.1 | signal peptidase I | - |
| NSQ52_RS11455 (NSQ52_11455) | tapA | 2250127..2250654 (-) | 528 | WP_058336654.1 | amyloid fiber anchoring/assembly protein TapA | - |
| NSQ52_RS11460 (NSQ52_11460) | - | 2250907..2251233 (+) | 327 | WP_058336653.1 | DUF3889 domain-containing protein | - |
| NSQ52_RS11465 (NSQ52_11465) | - | 2251268..2251462 (-) | 195 | WP_024718846.1 | YqzE family protein | - |
| NSQ52_RS11470 (NSQ52_11470) | comGG | 2251523..2251906 (-) | 384 | WP_058336652.1 | competence type IV pilus minor pilin ComGG | - |
| NSQ52_RS11475 (NSQ52_11475) | comGF | 2251903..2252400 (-) | 498 | WP_039166031.1 | competence type IV pilus minor pilin ComGF | - |
| NSQ52_RS11480 (NSQ52_11480) | comGE | 2252342..2252656 (-) | 315 | WP_007501227.1 | competence type IV pilus minor pilin ComGE | - |
| NSQ52_RS11485 (NSQ52_11485) | comGD | 2252640..2253086 (-) | 447 | WP_058336650.1 | competence type IV pilus minor pilin ComGD | - |
| NSQ52_RS11490 (NSQ52_11490) | comGC | 2253079..2253372 (-) | 294 | WP_008342186.1 | competence type IV pilus major pilin ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12936.47 Da Isoelectric Point: 4.8062
>NTDB_id=982790 NSQ52_RS11440 WP_017357978.1 2248243..2248578(+) (sinR) [Bacillus sp. FSL W8-1141]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE
Nucleotide
Download Length: 336 bp
>NTDB_id=982790 NSQ52_RS11440 WP_017357978.1 2248243..2248578(+) (sinR) [Bacillus sp. FSL W8-1141]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
92.793 |
100 |
0.928 |