Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NSQ52_RS07940 Genome accession   NZ_CP151973
Coordinates   1564962..1565864 (+) Length   300 a.a.
NCBI ID   WP_058337355.1    Uniprot ID   -
Organism   Bacillus sp. FSL W8-1141     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1559962..1570864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ52_RS07920 (NSQ52_07920) - 1560631..1562364 (+) 1734 WP_160757709.1 glycosyltransferase -
  NSQ52_RS07925 (NSQ52_07925) - 1562361..1562636 (+) 276 WP_008344827.1 FlhB-like flagellar biosynthesis protein -
  NSQ52_RS07930 (NSQ52_07930) sucC 1562813..1563973 (+) 1161 WP_008344824.1 ADP-forming succinate--CoA ligase subunit beta -
  NSQ52_RS07935 (NSQ52_07935) sucD 1563996..1564898 (+) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  NSQ52_RS07940 (NSQ52_07940) dprA 1564962..1565864 (+) 903 WP_058337355.1 DNA-processing protein DprA Machinery gene
  NSQ52_RS07945 (NSQ52_07945) topA 1566059..1568134 (+) 2076 WP_008344821.1 type I DNA topoisomerase -
  NSQ52_RS07950 (NSQ52_07950) trmFO 1568205..1569509 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NSQ52_RS07955 (NSQ52_07955) xerC 1569572..1570489 (+) 918 WP_039166693.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34045.38 Da        Isoelectric Point: 8.2776

>NTDB_id=982782 NSQ52_RS07940 WP_058337355.1 1564962..1565864(+) (dprA) [Bacillus sp. FSL W8-1141]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRSLQKIDFTRLQQAEENEFPIFQHIVQAYLKQNIHM
VPITSPLYPSSLKHIYDPPPVLFLKGNVTYLNEEKSLGVVGTRVPSSYGEACVKKLVGELVEEDWMIVSGLAKGIDGLAH
KECIRKKGKTIGVVAGGFQHVYPKEHVQMAQYMGEHHLLLSEHPPYIKPEKWHFPMRNRLISALTRGTIVVQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDSNSIGPARLIQQGAKLVHSTKDILEEFSLSGVQYTELP

Nucleotide


Download         Length: 903 bp        

>NTDB_id=982782 NSQ52_RS07940 WP_058337355.1 1564962..1565864(+) (dprA) [Bacillus sp. FSL W8-1141]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTCAAACAGGATCGATCATTACAAAAGATCGACTTTACCC
GCTTACAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAATATTCACATG
GTTCCCATCACATCACCTTTATATCCCAGCTCACTAAAACACATTTATGATCCTCCCCCAGTATTATTCCTAAAAGGAAA
CGTTACCTATTTAAATGAAGAAAAAAGTTTAGGTGTAGTAGGTACACGAGTGCCATCCTCTTATGGAGAAGCGTGCGTGA
AGAAACTTGTTGGAGAACTTGTAGAGGAAGATTGGATGATTGTGAGTGGTTTAGCAAAAGGAATTGATGGACTTGCACAC
AAAGAGTGCATAAGAAAAAAAGGAAAAACGATTGGTGTTGTAGCTGGCGGCTTTCAACATGTATATCCAAAAGAACATGT
GCAAATGGCTCAATATATGGGAGAACATCATTTACTGTTGTCAGAGCATCCGCCTTATATCAAACCAGAAAAATGGCATT
TTCCAATGAGAAACAGATTAATTAGTGCCCTGACAAGAGGAACCATCGTGGTCCAGTGCAAAGAAAAGAGCGGTTCGCTT
ATTACAGCCTACCAGGCATTAGAGCAAGGAAAAGAAGTGTTTGCTGTTGCAGGATCGATCTTTGATTCTAATTCTATAGG
TCCAGCTAGACTGATTCAGCAAGGTGCCAAGCTTGTTCATTCAACGAAGGATATTTTAGAGGAATTCTCCTTGAGTGGTG
TTCAATATACTGAACTCCCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.704

95.667

0.523
  dprA Legionella pneumophila strain ERS1305867

37.377

100

0.38
  dprA Lactococcus lactis subsp. cremoris KW2

39.373

95.667

0.377

Multiple sequence alignment