Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   R8635_RS08725 Genome accession   NZ_AP026924
Coordinates   1685342..1686073 (-) Length   243 a.a.
NCBI ID   WP_001866897.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700063     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1680342..1691073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8635_RS08695 (PC0062_17290) blpC 1680889..1681017 (+) 129 WP_000358815.1 quorum-sensing system pheromone BlpC -
  R8635_RS08700 (PC0062_17300) - 1681088..1682428 (-) 1341 WP_001017646.1 sensor histidine kinase -
  R8635_RS08705 (PC0062_17310) comE/blpR 1682442..1683179 (-) 738 WP_001219120.1 LytTR family DNA-binding domain-containing protein Regulator
  R8635_RS08710 (PC0062_17320) - 1683184..1683522 (-) 339 WP_000682120.1 LytTR family DNA-binding domain-containing protein -
  R8635_RS08715 (PC0062_17330) - 1683799..1684128 (+) 330 WP_000132572.1 hypothetical protein -
  R8635_RS08720 (PC0062_17340) - 1684296..1685345 (-) 1050 WP_000653771.1 ABC transporter permease -
  R8635_RS08725 (PC0062_17350) pptA 1685342..1686073 (-) 732 WP_001866897.1 ABC transporter ATP-binding protein Regulator
  R8635_RS08730 (PC0062_17360) - 1686141..1686551 (+) 411 WP_001278301.1 HIT family protein -
  R8635_RS08735 (PC0062_17370) - 1686561..1686848 (+) 288 WP_268217887.1 hypothetical protein -
  R8635_RS08740 (PC0062_17380) dnaJ 1687215..1688351 (-) 1137 WP_317657538.1 molecular chaperone DnaJ -
  R8635_RS08745 (PC0062_17390) - 1688753..1689109 (-) 357 WP_000114433.1 hypothetical protein -
  R8635_RS08750 (PC0062_17400) dnaK 1689111..1690934 (-) 1824 WP_000034673.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27030.52 Da        Isoelectric Point: 4.7737

>NTDB_id=98277 R8635_RS08725 WP_001866897.1 1685342..1686073(-) (pptA) [Streptococcus pneumoniae strain PZ900700063]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTMQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLDQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=98277 R8635_RS08725 WP_001866897.1 1685342..1686073(-) (pptA) [Streptococcus pneumoniae strain PZ900700063]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTATGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAGATGTTCCGTCTGGACCAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTAGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGCGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACAAAAGAG
GAGGACCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.614

99.177

0.72
  pptA Streptococcus thermophilus LMD-9

71.784

99.177

0.712

Multiple sequence alignment