Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NSS65_RS15265 Genome accession   NZ_CP151970
Coordinates   2910373..2911014 (-) Length   213 a.a.
NCBI ID   WP_034282566.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-1006     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2905373..2916014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS65_RS15230 (NSS65_15230) - 2906499..2906930 (+) 432 WP_024423315.1 Na(+)/H(+) antiporter subunit B -
  NSS65_RS15235 (NSS65_15235) - 2906930..2907271 (+) 342 WP_024423316.1 Na(+)/H(+) antiporter subunit C -
  NSS65_RS15240 (NSS65_15240) - 2907264..2908742 (+) 1479 WP_070325967.1 Na+/H+ antiporter subunit D -
  NSS65_RS15245 (NSS65_15245) - 2908749..2909228 (+) 480 WP_024425941.1 Na+/H+ antiporter subunit E -
  NSS65_RS15250 (NSS65_15250) - 2909228..2909509 (+) 282 WP_024425942.1 Na(+)/H(+) antiporter subunit F1 -
  NSS65_RS15255 (NSS65_15255) mnhG 2909493..2909867 (+) 375 WP_024423320.1 monovalent cation/H(+) antiporter subunit G -
  NSS65_RS15260 (NSS65_15260) - 2909960..2910349 (-) 390 WP_034282564.1 hotdog fold thioesterase -
  NSS65_RS15265 (NSS65_15265) comA 2910373..2911014 (-) 642 WP_034282566.1 response regulator transcription factor Regulator
  NSS65_RS15270 (NSS65_15270) comP 2911095..2913407 (-) 2313 WP_034282568.1 ATP-binding protein Regulator
  NSS65_RS15275 (NSS65_15275) comX 2913461..2913631 (-) 171 WP_073207246.1 competence pheromone ComX -
  NSS65_RS15280 (NSS65_15280) - 2913628..2914542 (-) 915 WP_176967247.1 polyprenyl synthetase family protein -
  NSS65_RS15285 (NSS65_15285) degQ 2914694..2914834 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  NSS65_RS15290 (NSS65_15290) - 2915340..2915696 (+) 357 WP_041115816.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24163.56 Da        Isoelectric Point: 4.6397

>NTDB_id=982664 NSS65_RS15265 WP_034282566.1 2910373..2911014(-) (comA) [Bacillus sp. FSL K6-1006]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNHQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=982664 NSS65_RS15265 WP_034282566.1 2910373..2911014(-) (comA) [Bacillus sp. FSL K6-1006]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGACCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCTTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATTTTAA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAACAAATTTTAGAAACCAACCATCAAGTGAAAATTATC
ATTTATACAGGGTATGAAGTAGATGATTATTTTGAAGAGGCTATTCGGGCTGGATTACACGGTGCAATTAGTAAAACAGA
GACGAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGGGAAGTTGTCATTCAGCTGTCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGCAGACTGATCACGAGCTCTTAACCGAACGGGAGTGTTTGATT
CTTAGAGAAGTGGAAAAAGGATACACGAACCAGGAGATTGCCGATGTGCTTCATTTGAGCAAACGGTCAATTGAGTACAG
TTTGACATCCATCTTTAATAAACTGAATGTTGGATCTCGTACAGAAGCGGTGTTAATTGCCAAGTCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718

Multiple sequence alignment