Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   MHI30_RS16980 Genome accession   NZ_CP151961
Coordinates   3316745..3317383 (-) Length   212 a.a.
NCBI ID   WP_075751279.1    Uniprot ID   -
Organism   Bacillus sp. FSL L8-0528     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3311745..3322383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI30_RS16945 (MHI30_16945) - 3312932..3313363 (+) 432 WP_003184834.1 Na(+)/H(+) antiporter subunit B -
  MHI30_RS16950 (MHI30_16950) - 3313363..3313704 (+) 342 WP_043929148.1 Na(+)/H(+) antiporter subunit C -
  MHI30_RS16955 (MHI30_16955) - 3313697..3315175 (+) 1479 WP_075751274.1 Na+/H+ antiporter subunit D -
  MHI30_RS16960 (MHI30_16960) - 3315181..3315657 (+) 477 WP_075751275.1 Na+/H+ antiporter subunit E -
  MHI30_RS16965 (MHI30_16965) - 3315657..3315941 (+) 285 WP_075751276.1 Na(+)/H(+) antiporter subunit F1 -
  MHI30_RS16970 (MHI30_16970) mnhG 3315925..3316299 (+) 375 WP_075751277.1 monovalent cation/H(+) antiporter subunit G -
  MHI30_RS16975 (MHI30_16975) - 3316339..3316728 (-) 390 WP_075751278.1 hotdog fold thioesterase -
  MHI30_RS16980 (MHI30_16980) comA 3316745..3317383 (-) 639 WP_075751279.1 response regulator transcription factor Regulator
  MHI30_RS16985 (MHI30_16985) comP 3317470..3319785 (-) 2316 WP_075751280.1 sensor histidine kinase Regulator
  MHI30_RS16990 (MHI30_16990) comX 3319806..3319976 (-) 171 WP_075751281.1 competence pheromone ComX -
  MHI30_RS16995 (MHI30_16995) - 3319960..3320859 (-) 900 WP_075751282.1 polyprenyl synthetase family protein -
  MHI30_RS17000 (MHI30_17000) degQ 3321048..3321188 (-) 141 WP_003184860.1 degradation enzyme regulation protein DegQ Regulator
  MHI30_RS17005 (MHI30_17005) - 3321674..3322021 (+) 348 WP_256700590.1 hypothetical protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24130.54 Da        Isoelectric Point: 4.7105

>NTDB_id=982278 MHI30_RS16980 WP_075751279.1 3316745..3317383(-) (comA) [Bacillus sp. FSL L8-0528]
MRRLLVIDDHPAVMEGTKAILETNQDFVVDCLSPEASEQFLKKHDFSAYDLILMDLNLGEINGMDLSKKILETCSSCKII
VYTGYEVEDYFEEAIRSGMHGAISKTESKEKIIEYIYQVLDNKIVVDFDYFKQLITQQKSKSNSQQTQHDLLTERECLIL
KEVEKGYTNQEIADALHLSKRSIEYSLTSVFSKLNVGSRTEAVLIAKSEGVL

Nucleotide


Download         Length: 639 bp        

>NTDB_id=982278 MHI30_RS16980 WP_075751279.1 3316745..3317383(-) (comA) [Bacillus sp. FSL L8-0528]
ATGAGAAGATTACTTGTGATCGATGATCATCCGGCTGTCATGGAGGGGACGAAGGCAATTCTTGAAACGAACCAGGACTT
TGTTGTCGATTGCCTCAGCCCTGAAGCCAGCGAACAATTTCTCAAGAAGCATGATTTTTCTGCGTATGACCTGATCTTAA
TGGATTTAAATTTGGGTGAAATCAACGGCATGGACCTATCTAAGAAAATCCTTGAGACGTGTTCATCATGCAAAATTATC
GTTTACACAGGCTATGAAGTCGAAGATTATTTTGAAGAGGCGATTCGTTCCGGCATGCACGGCGCCATCAGCAAAACGGA
ATCGAAGGAAAAGATTATAGAGTACATATATCAGGTGCTGGATAATAAAATTGTCGTCGATTTTGATTATTTCAAGCAGC
TGATTACACAGCAAAAATCGAAGTCAAACAGCCAGCAGACCCAGCACGATCTTTTGACTGAAAGGGAATGCCTGATCTTA
AAAGAAGTCGAAAAAGGCTATACAAATCAGGAAATTGCTGATGCGCTTCATTTAAGCAAGCGGTCGATCGAATACAGTCT
GACTTCCGTATTCAGCAAACTGAATGTAGGATCACGAACAGAAGCTGTTTTAATCGCGAAATCTGAAGGCGTACTTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

77.57

100

0.783

Multiple sequence alignment