Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   ACKVCM_RS11020 Genome accession   NZ_CP183123
Coordinates   2284813..2286240 (-) Length   475 a.a.
NCBI ID   WP_418267916.1    Uniprot ID   -
Organism   Escherichia coli strain 613     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2279813..2291240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKVCM_RS10990 (ACKVCM_10985) yeeZ 2279868..2280692 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  ACKVCM_RS10995 (ACKVCM_10990) yeeY 2280738..2281667 (+) 930 WP_418267918.1 LysR substrate-binding domain-containing protein -
  ACKVCM_RS11000 (ACKVCM_10995) yoeI 2281882..2281944 (+) 63 WP_010723108.1 membrane protein YoeI -
  ACKVCM_RS11005 (ACKVCM_11000) plaP 2281934..2283292 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  ACKVCM_RS11010 (ACKVCM_11005) tsuA 2283471..2284529 (+) 1059 WP_418267917.1 thiosulfate utilization transporter TsuA/YeeE -
  ACKVCM_RS11015 (ACKVCM_11010) tsuB 2284543..2284770 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  ACKVCM_RS11020 (ACKVCM_11015) sbcB 2284813..2286240 (-) 1428 WP_418267916.1 exodeoxyribonuclease I Machinery gene
  ACKVCM_RS11025 (ACKVCM_11020) dacD 2286449..2287615 (+) 1167 WP_000830142.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  ACKVCM_RS11030 (ACKVCM_11025) sbmC 2287733..2288206 (+) 474 WP_001105384.1 DNA gyrase inhibitor SbmC -
  ACKVCM_RS11035 (ACKVCM_11030) yeeA 2288404..2289462 (+) 1059 WP_001200892.1 FUSC family protein -
  ACKVCM_RS11040 (ACKVCM_11035) tmaR 2289634..2289963 (+) 330 WP_000450409.1 DUF496 family protein -
  ACKVCM_RS11045 (ACKVCM_11040) - 2290064..2290429 (-) 366 WP_001282181.1 EutP/PduV family microcompartment system protein -
  ACKVCM_RS11050 (ACKVCM_11045) - 2290700..2291071 (-) 372 WP_001295631.1 IS110 family transposase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54558.85 Da        Isoelectric Point: 5.3498

>NTDB_id=982270 ACKVCM_RS11020 WP_418267916.1 2284813..2286240(-) (sbcB) [Escherichia coli strain 613]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQETRAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNATVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=982270 ACKVCM_RS11020 WP_418267916.1 2284813..2286240(-) (sbcB) [Escherichia coli strain 613]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGACACGAGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGTTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAATTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTAATGGCGTTGATTGATGTTCCTCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGTGCATGGCGC
GGCAATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCACCGTTCCGGTTAAGCTGGTACATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGTGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579

Multiple sequence alignment