Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   MHI30_RS12890 Genome accession   NZ_CP151961
Coordinates   2579833..2581563 (-) Length   576 a.a.
NCBI ID   WP_075752419.1    Uniprot ID   -
Organism   Bacillus sp. FSL L8-0528     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2574833..2586563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI30_RS12870 (MHI30_12870) - 2575257..2575877 (-) 621 WP_075752423.1 N-acetylmuramoyl-L-alanine amidase -
  MHI30_RS12875 (MHI30_12875) - 2575911..2576231 (-) 321 WP_048349989.1 membrane lipoprotein lipid attachment site-containing protein -
  MHI30_RS12880 (MHI30_12880) spo0A 2577078..2577878 (-) 801 WP_003183361.1 sporulation transcription factor Spo0A Regulator
  MHI30_RS12885 (MHI30_12885) spoIVB 2578168..2579418 (-) 1251 WP_252606957.1 SpoIVB peptidase -
  MHI30_RS12890 (MHI30_12890) recN 2579833..2581563 (-) 1731 WP_075752419.1 DNA repair protein RecN Machinery gene
  MHI30_RS12895 (MHI30_12895) argR 2581595..2582044 (-) 450 WP_020452129.1 transcriptional regulator ArgR -
  MHI30_RS12900 (MHI30_12900) - 2582212..2583054 (-) 843 WP_075752417.1 TlyA family RNA methyltransferase -
  MHI30_RS12905 (MHI30_12905) dxs 2583051..2584952 (-) 1902 WP_075752415.1 1-deoxy-D-xylulose-5-phosphate synthase -
  MHI30_RS12910 (MHI30_12910) - 2585185..2586075 (-) 891 WP_075752413.1 polyprenyl synthetase family protein -
  MHI30_RS12915 (MHI30_12915) - 2586065..2586325 (-) 261 WP_075752411.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64539.37 Da        Isoelectric Point: 4.8010

>NTDB_id=982261 MHI30_RS12890 WP_075752419.1 2579833..2581563(-) (recN) [Bacillus sp. FSL L8-0528]
MLAELSIKNFAIIEELTVSFEKGLTVLTGETGAGKSIIIDAVSLLVGGRGSSEYVRYGEKRAELEGLFLLDSGHPVFDLC
TELGIEASDDMIVMRRDINANGKSICRVNGKLVTIAALREVGRLLLDIHGQHDNQLLMEDEHHLQLLDRFAGEEIENALK
AYQEVYSRYMDVMKKVKELSESEQEMAHRLDLIQFQLDEIESANLEPKEDELLQEERRQIANFEKIYEALQNAYNALRNE
QAGLDWVGMASSELENVSGINEGLNKVSESVANAYYILEDSTFQIRNMLDELEYDPERLDYIESRLNEIKQLKRKYGATV
EDIQAYSAKIEEEIDRIENRDSHLQALKSRLESIGKDVAIEAANVSEIRKKWAKKLAKQIQQELKDLYMEKSTFDTEFQV
KKAERDDDAPVVNGMPVQLTKHGIDTVHFLISTNTGEPLKSLSKVASGGELSRIMLAMKSIFSAQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHRVSIGSQVLCITHLPQVAAMADTHLLITKQSKDGRTTTSVTPLSKQEKIAEIGRMIAGVEVTDLTKR
HAKELLNQAKLVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=982261 MHI30_RS12890 WP_075752419.1 2579833..2581563(-) (recN) [Bacillus sp. FSL L8-0528]
TTGTTAGCTGAATTATCGATCAAAAACTTTGCCATTATCGAAGAATTAACCGTTTCTTTTGAAAAAGGGCTGACGGTTCT
GACCGGTGAAACCGGGGCCGGAAAATCGATCATCATCGACGCCGTCTCTTTGCTTGTTGGAGGCCGCGGCTCGTCCGAAT
ATGTCAGATATGGCGAAAAAAGAGCCGAATTGGAAGGGCTTTTCCTCCTTGACAGCGGCCATCCGGTTTTTGATTTGTGC
ACAGAACTGGGGATTGAAGCCTCGGATGACATGATCGTCATGAGGAGAGATATTAACGCAAACGGCAAGAGCATCTGCCG
CGTCAATGGAAAACTTGTCACCATTGCCGCTTTGCGGGAAGTCGGCAGACTGCTGCTTGACATTCACGGGCAGCACGACA
ATCAGCTGCTGATGGAGGACGAGCACCATCTTCAGCTTCTGGACAGGTTTGCAGGAGAAGAAATCGAAAATGCTTTAAAA
GCGTATCAGGAAGTTTACAGCCGCTACATGGACGTCATGAAAAAGGTGAAAGAGCTTTCTGAAAGCGAGCAGGAAATGGC
TCACAGACTTGATTTAATACAATTCCAGCTTGATGAAATCGAATCTGCAAACCTTGAGCCGAAAGAGGACGAACTTCTTC
AGGAAGAGCGCCGTCAAATCGCAAATTTTGAAAAAATATACGAAGCCCTGCAAAACGCCTATAATGCGCTTCGCAACGAG
CAGGCCGGGCTTGACTGGGTCGGCATGGCTTCAAGCGAGCTTGAAAACGTCTCAGGCATCAATGAAGGGCTCAATAAAGT
ATCTGAATCCGTAGCCAACGCTTACTACATTCTTGAAGATTCAACTTTTCAGATCAGAAATATGCTGGATGAACTCGAAT
ACGACCCCGAGCGCCTCGATTATATCGAATCGCGATTAAACGAAATCAAACAGCTGAAACGCAAATACGGCGCTACTGTC
GAAGATATCCAAGCTTATTCGGCTAAGATAGAGGAAGAGATCGATCGGATCGAAAACCGGGACAGCCACTTGCAGGCTTT
AAAATCCCGACTCGAATCAATCGGCAAGGATGTGGCGATTGAAGCCGCCAATGTGTCCGAAATCAGAAAAAAATGGGCGA
AAAAACTGGCCAAACAGATTCAGCAGGAACTGAAAGATTTGTATATGGAAAAATCGACATTCGATACGGAATTCCAGGTG
AAAAAAGCGGAACGGGATGATGATGCACCCGTCGTCAACGGTATGCCGGTTCAGCTCACAAAGCACGGCATTGACACCGT
CCATTTCCTAATCTCAACAAACACGGGAGAACCGCTCAAATCTTTGTCAAAGGTTGCATCTGGAGGAGAGCTGTCAAGAA
TCATGCTGGCGATGAAAAGCATTTTCTCTGCTCAGCAGGATGTCACATCGATCATTTTCGATGAAGTGGATACGGGTGTA
AGCGGCAGAGTCGCACAGGCGATCGCCGAAAAAATACACCGCGTCTCGATCGGTTCTCAAGTTTTATGCATTACCCACTT
GCCGCAGGTGGCCGCCATGGCTGACACCCACCTTTTGATCACGAAACAGTCGAAAGACGGGAGAACGACGACAAGCGTCA
CACCGTTGTCAAAACAGGAAAAAATAGCGGAAATCGGCCGGATGATCGCCGGTGTTGAAGTAACGGATTTGACGAAGCGC
CATGCGAAAGAACTTTTGAACCAAGCTAAGCTTGTTAAAACTACCGGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

81.771

100

0.818

Multiple sequence alignment