Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MHI30_RS08795 Genome accession   NZ_CP151961
Coordinates   1725276..1726178 (+) Length   300 a.a.
NCBI ID   WP_075752847.1    Uniprot ID   -
Organism   Bacillus sp. FSL L8-0528     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1720276..1731178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI30_RS08775 (MHI30_08775) - 1720928..1722625 (+) 1698 WP_075752851.1 hypothetical protein -
  MHI30_RS08780 (MHI30_08780) - 1722622..1722906 (+) 285 WP_025811381.1 FlhB-like flagellar biosynthesis protein -
  MHI30_RS08785 (MHI30_08785) sucC 1723082..1724242 (+) 1161 WP_075752849.1 ADP-forming succinate--CoA ligase subunit beta -
  MHI30_RS08790 (MHI30_08790) sucD 1724261..1725163 (+) 903 WP_020451379.1 succinate--CoA ligase subunit alpha -
  MHI30_RS08795 (MHI30_08795) dprA 1725276..1726178 (+) 903 WP_075752847.1 DNA-processing protein DprA Machinery gene
  MHI30_RS08800 (MHI30_08800) topA 1726383..1728458 (+) 2076 WP_020451381.1 type I DNA topoisomerase -
  MHI30_RS08805 (MHI30_08805) trmFO 1728534..1729838 (+) 1305 WP_075752845.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MHI30_RS08810 (MHI30_08810) xerC 1729905..1730819 (+) 915 WP_020451383.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 33227.44 Da        Isoelectric Point: 10.1643

>NTDB_id=982253 MHI30_RS08795 WP_075752847.1 1725276..1726178(+) (dprA) [Bacillus sp. FSL L8-0528]
MNDSSDLLILLRLRGTLSPSLLTKWWKQDPSLSLTGEKNHLLTKHSLKRSDLCSIRKLAEQELSNVKRLIRSYEAAGVRM
TAICSPDYPASLKTIHDPPPVLFFKGNVKLLHEQRLIGIVGTRSPSLYGKRAAVHLVSELCKKSWTIVSGLAKGIDGLAH
QESIRSKGRTIGVIAGGFNNIYPREHRQLAGQMAENHLLVSEHPPDVKPQKWHFPMRNRLISGLTEGIVVVQGKEKSGSL
ITAYQALEQGREVFAVPGPIFDANSFGPSRLIQEGAKLVLNIEDILSELSPSRTQYPEPV

Nucleotide


Download         Length: 903 bp        

>NTDB_id=982253 MHI30_RS08795 WP_075752847.1 1725276..1726178(+) (dprA) [Bacillus sp. FSL L8-0528]
ATGAACGACAGCAGCGATCTTTTGATATTGCTCCGCCTTCGCGGCACACTCTCCCCTTCTCTGCTGACCAAGTGGTGGAA
GCAGGATCCTTCCTTGTCTCTTACGGGCGAAAAAAACCATCTTTTAACGAAGCATTCATTAAAAAGATCAGACTTGTGCT
CCATACGAAAACTGGCGGAACAAGAACTGTCTAATGTTAAACGGCTCATCCGTTCTTACGAAGCGGCCGGTGTCCGCATG
ACCGCCATATGTTCCCCCGATTATCCAGCCAGCCTGAAAACCATTCATGACCCGCCTCCCGTCCTTTTTTTTAAAGGCAA
CGTTAAACTTCTCCATGAACAAAGACTGATCGGAATCGTCGGAACCCGTAGCCCGTCATTATACGGAAAAAGAGCAGCGG
TTCACCTTGTCAGTGAGCTTTGCAAAAAAAGCTGGACGATCGTCAGCGGCCTTGCAAAAGGAATTGACGGCCTCGCCCAT
CAGGAGAGCATCCGTTCAAAGGGAAGGACAATCGGCGTCATCGCGGGCGGATTCAATAACATATATCCCCGTGAACACCG
CCAGCTCGCCGGTCAAATGGCCGAAAACCACCTGCTGGTATCAGAGCACCCTCCCGACGTTAAACCTCAAAAATGGCACT
TTCCGATGCGAAATCGGCTGATCAGCGGATTAACGGAAGGAATCGTTGTCGTCCAAGGAAAGGAAAAGAGCGGGTCGCTC
ATCACAGCATATCAGGCCCTTGAGCAGGGGCGGGAGGTGTTCGCCGTGCCGGGTCCGATCTTTGACGCCAACTCTTTCGG
TCCTTCAAGGCTGATCCAGGAAGGGGCGAAACTCGTATTGAATATTGAAGATATTTTGAGCGAACTGTCGCCTTCACGGA
CTCAATATCCGGAACCTGTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

56.856

99.667

0.567
  dprA Haemophilus influenzae Rd KW20

45.763

78.667

0.36

Multiple sequence alignment