Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   R8625_RS09565 Genome accession   NZ_AP026923
Coordinates   1845159..1846112 (-) Length   317 a.a.
NCBI ID   WP_317649157.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700054     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1840159..1851112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8625_RS09535 (PC0054_18550) - 1840920..1841543 (-) 624 WP_130894698.1 ribonuclease P -
  R8625_RS09540 (PC0054_18560) jag 1841594..1842580 (-) 987 WP_130894699.1 RNA-binding cell elongation regulator Jag/EloR -
  R8625_RS09545 (PC0054_18570) - 1842599..1843423 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  R8625_RS09550 (PC0054_18580) rnpA 1843398..1843769 (-) 372 WP_000739246.1 ribonuclease P protein component -
  R8625_RS09555 - 1843786..1843917 (-) 132 WP_000768904.1 hypothetical protein -
  R8625_RS09560 (PC0054_18590) - 1843918..1845108 (-) 1191 WP_000167769.1 acetate kinase -
  R8625_RS09565 (PC0054_18600) comYH 1845159..1846112 (-) 954 WP_317649157.1 class I SAM-dependent methyltransferase Machinery gene
  R8625_RS09570 - 1846173..1846767 (-) 595 Protein_1857 class I SAM-dependent methyltransferase -
  R8625_RS09575 (PC0054_18630) comGG/cglG 1846870..1847316 (-) 447 WP_001811371.1 competence type IV pilus minor pilin ComGG Machinery gene
  R8625_RS09580 (PC0054_18640) comGF/cglF 1847294..1847755 (-) 462 WP_000250523.1 competence type IV pilus minor pilin ComGF Machinery gene
  R8625_RS09585 (PC0054_18650) comGE/cglE 1847718..1848020 (-) 303 WP_317649158.1 competence type IV pilus minor pilin ComGE Machinery gene
  R8625_RS09590 (PC0054_18660) comGD/cglD 1847983..1848417 (-) 435 WP_000608686.1 competence type IV pilus minor pilin ComGD Machinery gene
  R8625_RS09595 (PC0054_18670) comGC/cglC 1848380..1848643 (-) 264 WP_000962025.1 competence type IV pilus major pilin ComGC Machinery gene
  R8625_RS09600 (PC0054_18680) - 1848645..1848902 (-) 258 WP_000698511.1 hypothetical protein -
  R8625_RS09605 (PC0054_18690) - 1849173..1850129 (-) 957 WP_219601358.1 N-acetylmuramoyl-L-alanine amidase family protein -
  R8625_RS09610 (PC0054_18700) - 1850133..1850465 (-) 333 WP_050085269.1 phage holin -
  R8625_RS09615 (PC0054_18710) - 1850469..1850768 (-) 300 WP_001811580.1 hypothetical protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35760.98 Da        Isoelectric Point: 4.3070

>NTDB_id=98215 R8625_RS09565 WP_317649157.1 1845159..1846112(-) (comYH) [Streptococcus pneumoniae strain PZ900700054]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELNQVKDNNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGATFLTSLDKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGFKYLKSDGYAIFLAPSDLLTSPQ
SDLLKVWLKEEASLVAMISLPENLFANAKQSKTIFILQKKSEIAVEPFVYPLASLQDARVLMKFKENFQKWTQGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=98215 R8625_RS09565 WP_317649157.1 1845159..1846112(-) (comYH) [Streptococcus pneumoniae strain PZ900700054]
ATGGATTTTGAAAAAATTGAACAAGCTTATACCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAACAGCATCTATCTGGATGGTGAAACTGAGCTAAACCAGGTCAAAGACAACAATC
AGGCCCTTAAGCGTTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACACCGGATGCTATTGCTTTGCTTTTGGTGTTTATTGTGGAAGAGTTGTTTAA
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTCTAGGCGCTACTTTCTTGACCTCGCTTGATAAAA
AGGTGGATTACTTGGGAATGGAAGTGGATGATTTACTGATTGATCTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGCGATGTGGTCATCAGTGACTTGCCTGTCGG
CTATTATCCTGATGATGCCGTTGCGTCGCGTCATCAAGTTGCTTCTAGCCAAGAACATACTTACGCCCATCACTTGCTCA
TGGAACAAGGGTTTAAGTACCTTAAGTCAGATGGATATGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTGATTTGTTGAAAGTCTGGTTGAAAGAGGAGGCAAGTCTGGTTGCTATGATTAGTCTGCCTGAAAATCTCTTTGCTAA
TGCTAAACAATCTAAGACTATTTTTATCCTACAGAAGAAAAGTGAAATAGCAGTGGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGGGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

54.633

98.738

0.539
  comYH Streptococcus mutans UA159

54.313

98.738

0.536

Multiple sequence alignment