Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   R8625_RS09115 Genome accession   NZ_AP026923
Coordinates   1770703..1771740 (-) Length   345 a.a.
NCBI ID   WP_000727277.1    Uniprot ID   A0A0B7LHQ0
Organism   Streptococcus pneumoniae strain PZ900700054     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1765703..1776740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8625_RS09090 (PC0054_17800) - 1766442..1767773 (-) 1332 WP_000390039.1 hemolysin family protein -
  R8625_RS09095 (PC0054_17810) endA 1768064..1768888 (-) 825 WP_317649145.1 DNA-entry nuclease EndA Machinery gene
  R8625_RS09100 (PC0054_17820) - 1768927..1769115 (-) 189 WP_001813390.1 DNA-directed RNA polymerase subunit beta -
  R8625_RS09105 (PC0054_17830) murA 1769108..1770391 (-) 1284 WP_317649434.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  R8625_RS09110 (PC0054_17840) - 1770415..1770645 (-) 231 WP_000250393.1 DUF1146 family protein -
  R8625_RS09115 (PC0054_17850) sepM 1770703..1771740 (-) 1038 WP_000727277.1 SepM family pheromone-processing serine protease Regulator
  R8625_RS09120 (PC0054_17860) coaD 1771724..1772212 (-) 489 WP_001280769.1 pantetheine-phosphate adenylyltransferase -
  R8625_RS09125 (PC0054_17870) rsmD 1772202..1772741 (-) 540 WP_000706963.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  R8625_RS09130 (PC0054_17880) asnA 1772806..1773798 (-) 993 WP_000747993.1 aspartate--ammonia ligase -
  R8625_RS09135 (PC0054_17890) - 1773910..1774593 (-) 684 WP_001016913.1 Bax inhibitor-1/YccA family protein -
  R8625_RS09140 (PC0054_17900) - 1774649..1775389 (-) 741 WP_000152678.1 RNA methyltransferase -
  R8625_RS09145 (PC0054_17910) - 1775423..1775701 (+) 279 WP_001174613.1 acylphosphatase -
  R8625_RS09150 (PC0054_17920) yidC 1775779..1776705 (+) 927 WP_000835942.1 membrane protein insertase YidC -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 37537.57 Da        Isoelectric Point: 5.0724

>NTDB_id=98211 R8625_RS09115 WP_000727277.1 1770703..1771740(-) (sepM) [Streptococcus pneumoniae strain PZ900700054]
MKKKIRWPLYVIAALIVTFLAFVVPLPYYIEVPGGSEDIRQVLKVNDTEDKEAGAYQFVTVGVQHATLAHMIYAWLTPFT
DIRSAQETTGGSSDVEFMRINQFYMQTSQNMAKYQGLKTAGKDIELKYFGVYVLNVTDNSTFKGILNISDTVTAVNDQTF
DSSKDLIDYVSSQKLGDSVKVTYEEDGQTKSAEGKIITLENGKNGIGIGLIDRTEVISNVPISFSTAGIGGPSAGLMFSL
AIYTQIAHPDLRNGRIVAGTGTIDRDGNVGDIGGIDKKVVASARAGAAIFFAPDNPVSEEEQKAHPDAKNNYQTALEAAK
TIKTDMKIVPVKTLQDAIDYLKNNP

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=98211 R8625_RS09115 WP_000727277.1 1770703..1771740(-) (sepM) [Streptococcus pneumoniae strain PZ900700054]
ATGAAAAAAAAGATTAGATGGCCCTTATACGTCATTGCGGCCTTGATTGTGACCTTCTTGGCATTTGTAGTGCCCTTGCC
TTATTATATAGAGGTTCCAGGTGGTTCGGAAGATATTCGCCAAGTCCTTAAAGTAAATGACACAGAAGATAAGGAAGCTG
GTGCCTATCAATTCGTTACGGTTGGTGTTCAACATGCCACTTTAGCTCATATGATTTATGCTTGGTTGACACCTTTTACA
GATATTCGTAGTGCTCAGGAGACTACAGGTGGTTCTTCCGATGTTGAATTTATGCGAATCAATCAATTCTACATGCAAAC
ATCGCAAAATATGGCCAAGTATCAAGGACTAAAAACAGCTGGTAAGGATATCGAACTCAAGTACTTTGGAGTTTATGTTT
TGAATGTGACGGATAATTCAACCTTTAAAGGGATTCTCAATATCTCTGATACAGTCACAGCAGTCAATGATCAGACCTTT
GATAGTTCCAAAGACTTGATTGATTACGTCAGTTCTCAAAAATTAGGGGACTCCGTCAAGGTCACCTATGAAGAGGATGG
GCAAACCAAGTCTGCAGAAGGAAAGATTATCACCTTGGAAAATGGAAAAAATGGAATTGGAATCGGCTTGATTGATCGTA
CAGAGGTAATCAGCAATGTCCCAATTAGCTTTTCAACAGCTGGTATTGGCGGCCCAAGTGCTGGTCTCATGTTTAGTCTA
GCTATCTATACTCAAATAGCTCACCCAGATCTTCGTAATGGTCGTATTGTTGCCGGTACAGGTACCATTGACCGCGATGG
TAATGTGGGAGACATTGGAGGTATTGATAAGAAGGTTGTAGCTTCGGCTAGGGCAGGTGCTGCTATTTTCTTTGCTCCTG
ATAACCCTGTTAGCGAAGAAGAACAAAAGGCGCATCCGGACGCGAAAAACAACTACCAAACAGCCCTAGAAGCGGCTAAA
ACAATCAAGACGGATATGAAAATCGTGCCCGTTAAAACCCTACAAGATGCGATTGATTACTTGAAAAACAATCCCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0B7LHQ0

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

59.649

99.13

0.591


Multiple sequence alignment